Pairwise Alignments

Query, 260 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  124 bits (310), Expect = 3e-33
 Identities = 85/270 (31%), Positives = 143/270 (52%), Gaps = 16/270 (5%)

Query: 1   MPMKLAKFAFASLTI----LFLVAPLIAILPLAFTSSVILTYPIPSWSLRWFEELFTADA 56
           M  +L K +F++L +     FL AP+  ++  +F  S ++T     +S +W+ ELF  D 
Sbjct: 1   MSNRLRKLSFSTLMLWGGMFFLYAPMFILVFYSFNESKLVTV-WGGFSAKWYGELFRDDQ 59

Query: 57  WRRAIFNSLIIGTGTTLLATILGTAASLGL-RNRLIFFRGSMRTLFLLPMVVPAVVLGVG 115
              A+  SL +    + +A ILGT A+  + R    + + ++  +   P+V+P V+ G+ 
Sbjct: 60  ILDAVATSLKVAFFASTMAVILGTMAAFVMTRFARSWGKMTLSNMITAPLVMPEVITGLS 119

Query: 116 MQVL------LAGFGLTNSYAGVIIAHTVVAVPFVVVSVIGALDGIDERVELAAQSLGAS 169
           + +L      L G+        V IAH+     +V V V   L  +D  +E AAQ LGA+
Sbjct: 120 LLLLFVHMADLLGWPAERGMLTVWIAHSTFCAAYVAVVVSSRLRELDMSIEEAAQDLGAT 179

Query: 170 PATVFHRVTLPLALPGVLSGAVLAFATSLDEVVLTLFVAGPNQRTLARQMFSSIRENISP 229
           P   F  +T+P+  P +++G +L+F+ SLD++V+  F +GP   TL   +FSS+R  +SP
Sbjct: 180 PLKTFFHITVPMISPALIAGWLLSFSLSLDDLVIASFASGPGATTLPMVVFSSVRMGVSP 239

Query: 230 AIAAAAFLFIAATIFFGLVVVLSRFMLAKR 259
            I A A L I   +   L+  +S + LA+R
Sbjct: 240 KINALATLII---LIVSLIAFIS-WYLARR 265