Pairwise Alignments

Query, 276 a.a., TRm1b transposase from Sinorhizobium meliloti 1021

Subject, 255 a.a., Mobile element protein from Xanthomonas campestris pv. campestris strain 8004

 Score = 57.0 bits (136), Expect = 4e-13
 Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 15/251 (5%)

Query: 20  AGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYR 79
           A S +R R RP   D E++  +  +    P  G+ ++  I+RR     G  W N KRV+R
Sbjct: 5   ARSTARYRRRPDR-DEEVIALLSELAERFPERGFGKLFQIIRRR----GHLW-NHKRVWR 58

Query: 80  VMKLHNLLLVRHTGA-VDNRLHEGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCD 138
           V  L  L   R +   V  R  +     +R N  W  D       +  + R    +D   
Sbjct: 59  VYCLMKLNQRRRSKRRVPTRHPQPLACGDRPNAGWSIDFMSDALWDGRRFRTFNVIDDFS 118

Query: 139 REAIAHVATTEGIKSQDVQDLVITAVENRFGRINMLSEPIEWLTDNGSCFIAKDTASLLR 198
           REA+A         ++ ++ L   A    +        P +   DNG  F+A   A    
Sbjct: 119 REALAIDVDLNLPAARVIRTLERIAAWRGY--------PNKLRLDNGPEFVALALAEWAE 170

Query: 199 DIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVAVNPTPDAETVMAQLPFWFEHYNNLHPH 258
             G+         P  NG  E F  +++R  + ++       V  Q   W   YN   PH
Sbjct: 171 RKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHIFRTLSEVREQTEQWLADYNQQIPH 230

Query: 259 SALGYQSPREF 269
            +LG  +P EF
Sbjct: 231 DSLGGLTPAEF 241