Pairwise Alignments

Query, 497 a.a., CpaF2 pilus assembly protein from Sinorhizobium meliloti 1021

Subject, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

 Score =  154 bits (389), Expect = 8e-42
 Identities = 115/390 (29%), Positives = 199/390 (51%), Gaps = 22/390 (5%)

Query: 62  PATAKPENAEQYYSLKKEIFSALIATIDVAALSNMDGEQARNEIGAIINDIVAAKKAGIS 121
           P +  PEN E++  +  ++F        VA +S+   E+ +     I++ I  + K  I+
Sbjct: 98  PYSDIPENDEEFGKVVTKLFDM------VAKVSSQKNEKKKG----ILSKITDSGKININ 147

Query: 122 MAEQNDLLSDICNDILGYGPLEPLLARDDIADIMVNGA-NQVFIEVNGRVQETGIRFRDN 180
            +E++  L  +  D++G G LEP+     I DI V GA N   +     +  + I + D 
Sbjct: 148 KSERDKFLYLLKRDLIGLGTLEPIKRDPYIEDIHVIGAKNCQLVHKIYDMLPSNIEWEDE 207

Query: 181 EQLLNICQRIVSQVGRRVDESSPICDARLGDGSRVNVI-APPLAIDGPTLTIRKFKKEKL 239
             + N  + +  ++GR V +++PI D  L DGSR+N++ +  +++ GP+ TIRKF    +
Sbjct: 208 GDISNYLKNMCERIGRPVSDATPIVDGSLPDGSRINILYSGDVSLKGPSFTIRKFTDVPI 267

Query: 240 TLDQLVRFGSISPEGAEVLKIIGRVRCNVLISGGTGSGKTTLLNCLTGYIDHGERVITCE 299
           ++ Q++ +G++S + A  L +      ++ I G T SGKTT LN +  +I    ++ +CE
Sbjct: 268 SITQIISWGTMSAQTAAYLWLCLEYGMSIFICGETASGKTTSLNAILPFIKPKSKIFSCE 327

Query: 300 DAAELQLQQPHVVRLETRPPNIEGQGEITMRNLVKNCLRMRPERIIVGEVRGPEAFDLLQ 359
           D +E++   P   +L TR    E +  +T+ +L++  LR RP  IIVGE+R  E     Q
Sbjct: 328 DTSEVKPPNPVWQQLLTRERGPE-ESRVTLFDLLRAALRSRPNYIIVGEIRSVEGAVAFQ 386

Query: 360 AMNTGHDGSMGTLHANSPREAMARIEAMITMGGSSLPAKTIREMLVSSVDVIVQAARLRD 419
           AM TGH   + T HA + R+ + R    +T     +P   +  + V    + V A     
Sbjct: 387 AMQTGHP-VISTFHAANVRKMIQR----LTGDPICIPQTFMDNLNVCLFQLAVYAR--GK 439

Query: 420 GSRRITHITEVLGMEGEV--VTTQDLFVYD 447
             RR+  + E+ G   EV  V T+ +F +D
Sbjct: 440 FLRRVVSVEEIEGYYKEVDGVITRGVFEWD 469