Pairwise Alignments

Query, 1071 a.a., Diguanylate cyclase/phosphodiesterase from Sinorhizobium meliloti 1021

Subject, 886 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  346 bits (887), Expect = 5e-99
 Identities = 186/448 (41%), Positives = 277/448 (61%), Gaps = 14/448 (3%)

Query: 628  DITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESN--HARMAVLCL 685
            D+T R++AEE       ++ +++ +D LT L NR+ FR+   +A+ ++   H  +AV+ +
Sbjct: 429  DVTARKKAEE-------RIRYLSNYDTLTRLPNRVLFRDRLYQAVVQARRGHGGLAVMFI 481

Query: 686  DLDGFKAVNDTLGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESRDEAF 745
            DLD F  VNDTLGH AGD LL  +++R+  A    +TVAR+GGDEFA+IQ    S D A 
Sbjct: 482  DLDQFSLVNDTLGHAAGDHLLMTIASRINAAAEEADTVARVGGDEFALIQTALTSADSAA 541

Query: 746  RLAQRLIDTLSEPFSIEGAAANVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGRGT 805
             LA+RLID +  P  + G    +G ++GIA  P+DGT  D L+K AD+A+Y A  SG  +
Sbjct: 542  SLARRLIDVIRTPVDLGGREVVIGANVGIAIYPQDGTDPDNLMKNADMAMYRAVKSGDDS 601

Query: 806  YKLFDVAMHAQLQAHQQMKITMRDALAKGE-FELHYQPLVSLESRCVSCCEALLRWRHPE 864
               F   M+A+      ++  +R AL  G+   LHYQ    +ES      EAL RW HP 
Sbjct: 602  CCFFSNEMNAEAAVRLSLEEDLRRALDSGDQLFLHYQLQFCIESGRPVGAEALARWTHPT 661

Query: 865  RGMIAPSEFIPIAEETGLIVPIGEWILGEACRQAARWPE----RVSVAVNLSPVQFKHRN 920
             G I P+ FIP+AE++GLI+ +G+W+LG A  + ARW      R+++AVN+S VQF+ + 
Sbjct: 662  LGAIPPTRFIPVAEDSGLILALGDWVLGTALAEYARWRAAGCGRLTIAVNMSAVQFRQKG 721

Query: 921  LVRAVAKALSATRLDPARLQLEITETVLLDESEHNLELLQDLRRLGVKIAMDDFGTGYSS 980
            LV  V   L+   + P  L+LE+TE++L+ +++  +  L  L + G+++++DDFGTGYSS
Sbjct: 722  LVERVTDLLAQHGVPPEDLELELTESMLMQDADQAVAQLTALSQAGIRLSIDDFGTGYSS 781

Query: 981  LGYLRSFPFDKIKVDQAFVRDLPHGKESLAIVKAVAGLGQSLGMTTSVEGVETEDQLAVV 1040
            LGYL+ F  DK+KVDQ+FVRD+        I +A+  LG SLG+    EGVET +Q+A +
Sbjct: 782  LGYLKLFRVDKLKVDQSFVRDVTEDGNDAVIARAIINLGHSLGLEVIAEGVETPEQMAYL 841

Query: 1041 DSEGFNEVQGYLFSRPLPAAEISKLIAA 1068
              EG + VQGYL + P P   +++ + A
Sbjct: 842  RREGCDVVQGYLMAYPEPGETVARRLLA 869



 Score = 40.0 bits (92), Expect = 8e-07
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 3/137 (2%)

Query: 383 RRAAEIAQQEAQAFIR---SIFDSSPDCVRVLDMEGRPLLMNEAGRRIFGLNEGAPVTGQ 439
           R    I  +  Q+ +R   +   ++ + + + D EGR   +NEA   + G      +   
Sbjct: 304 RLGEAIVYERGQSLMRLQSAAIAAAANAIVITDGEGRVEWVNEAYHLLSGYERDQIIGTL 363

Query: 440 TWDSIGRASDADKVEAAWESVRRGKTARFEISVRDAGGEERCMDVISAPITDHHGKPFRI 499
                G ++       AW ++R G+  R EI      G    +D    PI D  G+   +
Sbjct: 364 PAVLAGPSAANPTAIEAWPTLRAGQVWRGEIHETHRDGRTYIVDKTITPIVDASGRLSHL 423

Query: 500 LSIWRDITDAKRASDEI 516
           +++  D+T  K+A + I
Sbjct: 424 VAVDEDVTARKKAEERI 440



 Score = 33.9 bits (76), Expect = 5e-05
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 25  AEPVIIKDDASRFVFINDAACDLLGKDRNQLIGRTDHDILPGEQADRIVSLDR-IVLSTS 83
           A  ++I D   R  ++N+A   L G +R+Q+IG T   +L G  A    +++    L   
Sbjct: 329 ANAIVITDGEGRVEWVNEAYHLLSGYERDQIIG-TLPAVLAGPSAANPTAIEAWPTLRAG 387

Query: 84  EGHELEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKFVVVTIVDITNLRRTEETLR 139
           +    E   T  DG  RT +  K    I   S +   +V    D+T  ++ EE +R
Sbjct: 388 QVWRGEIHETHRDG--RTYIVDKTITPIVDASGRLSHLVAVDEDVTARKKAEERIR 441



 Score = 33.5 bits (75), Expect = 7e-05
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 3   APTPEPPSHRSHDLFQRLMDGIAEPVIIKDDASRFVFINDAACDLLGKDRNQLIGRTDHD 62
           A  P+  +    ++F  L DG+    I+ DD  R   +N AA  + G++    +G++   
Sbjct: 34  AKGPDRRAREDAEIFLGLSDGL----IVLDDGGRVSALNRAAQRMTGQEGEAAVGKSARR 89

Query: 63  ILPG-----EQADRIVS 74
           +LPG     E  DR+ S
Sbjct: 90  LLPGLESVLEGKDRLAS 106