Pairwise Alignments

Query, 404 a.a., NuoD2 NADH I chain D from Sinorhizobium meliloti 1021

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  165 bits (417), Expect = 2e-45
 Identities = 118/382 (30%), Positives = 194/382 (50%), Gaps = 38/382 (9%)

Query: 24  LGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRLDYLC 83
           +GP HP     LR+ L ++GE V+  +  +GY+HRG E++ E   Y +   L++R+  +C
Sbjct: 6   IGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCGIC 65

Query: 84  PPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAMTALLYA 143
              +  +FA  +E +  IE P +A+Y+RV+  EL RI  HL+      + +   T  ++ 
Sbjct: 66  SYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGIWM 125

Query: 144 MREREMIMDLLEMITGARMHTSYCRVGGVREDLPDGFLPKIREFCEIFPNRIRDYERLIE 203
           +  RE IMDLLE+ITG R++  +  VGGVR DL    L KI +  + F   +++   + E
Sbjct: 126 LNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIEVFE 185

Query: 204 NNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGV---DWDIRRDEPYEIYDRLDFDVIT 260
              +   R++ +G I   + +    +GP  RASG+   DW IR    +E Y  L+F    
Sbjct: 186 TGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIR----HETYKALNFKPDW 241

Query: 261 REEGDCYSRWLCRVDEMRESIRLIEQCMEQMPEGPFQVDIPTIAFPVDKERVHCSMEALI 320
           R EGD Y+R + R DE+  S+ LI + +E   E    V         +K  +  +     
Sbjct: 242 RNEGDNYARMMVRHDEVLTSVELIRRALEHYAESSGIVR--------NKAEIRAT----- 288

Query: 321 QHFDLSAYGFDVPAGEVYSVIEAPKGELGFYI-ISDGSPKPFRMKVRAPSFVNLQAL-FG 378
                         GE Y+  EA +GE+ + I I+DG     R+ +R P+ +NL+A  + 
Sbjct: 289 -------------EGEWYN--EAHRGEVYYKIAITDGGLIK-RIIIRTPTVMNLEAYKYM 332

Query: 379 VTNARYLADMIAVLGSLDPVMA 400
           + +   +AD +A   S+DP ++
Sbjct: 333 IKDCPTIADAVATYTSIDPCVS 354