Pairwise Alignments

Query, 404 a.a., NuoD2 NADH I chain D from Sinorhizobium meliloti 1021

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  125 bits (314), Expect = 2e-33
 Identities = 99/383 (25%), Positives = 171/383 (44%), Gaps = 27/383 (7%)

Query: 24  LGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRLDYLC 83
           +GP H +     RL L ++ E V+  +  IG  HRG E+L E     +   L +++  +C
Sbjct: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67

Query: 84  PPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAMTALLYA 143
              +  + A  VE    IE P RA +IR+++ EL R+  H L+ G     LG  T  +  
Sbjct: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127

Query: 144 MREREMIMDLLEMITGARMHTSYCRVGGVRE--DLPDGFLPKIREFCEIFPNRIRDYERL 201
              RE IM +   I+G+R+H S   +GG+R   ++ +  +P I +    +   +  +   
Sbjct: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFLER 187

Query: 202 IENNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGVDWDIRRDEPYEIYDRLDFDVITR 261
           + N+ + +SR + VGV+    A      GP  R S V  D+R+      YD  DFD I  
Sbjct: 188 MLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDEILF 247

Query: 262 EEGDCYSRWLCRVDEMRESIRLIEQCMEQMPEGPFQVDIPTIAFPVDKERVHCSMEALIQ 321
           + GD ++R   R  E  ES+++I Q ++ + +                +R++     L +
Sbjct: 248 DSGDVFARLAVRFYECLESVKIIRQALDALKD-------------TSDKRIYNPNYELHE 294

Query: 322 HFDLSAYGFDVPAGEVYSVIEAPKGELGFYIISDGSPKPFRMKVRAPSFVNLQALFGVTN 381
              ++ Y             EA +GE  +    D      + K+R P+  NL A+  +  
Sbjct: 295 FKPINCY------------TEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVK 342

Query: 382 ARYLADMIAVLGSLDPVMAEVDK 404
             +++D   ++ S DP     D+
Sbjct: 343 GYHVSDAELIIASCDPCFTCTDR 365