Pairwise Alignments

Query, 550 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 529 a.a., microcin C ABC transporter ATP-binding protein YejF from Klebsiella michiganensis M5al

 Score =  442 bits (1138), Expect = e-128
 Identities = 242/529 (45%), Positives = 341/529 (64%), Gaps = 7/529 (1%)

Query: 6   KPILRIDKLTVDFLSEGDPVRAVDDVSFDVCPGETLVILGESGSGKSVSTGTVMGLIDCP 65
           +P+L ID L++ F  +G+    V ++S  +  GETL ++GESGSGKSV+  +V+ L+  P
Sbjct: 3   QPLLDIDNLSIAFRQQGETTSVVSELSLQIAVGETLALVGESGSGKSVTALSVLRLLPSP 62

Query: 66  PGDIVSGSLVFDGTDLSRLDDEGRRELNGRRIAMIFQDPLAYLNPVYTVGRQIAEVFESH 125
           P    +G + F G  L   D+   R + G RIAMIFQ+P+  LNP++T+ +Q+ EV   H
Sbjct: 63  PVSYPTGDIRFHGQSLLHADERTLRGVRGNRIAMIFQEPMVSLNPLHTLEKQLYEVLSLH 122

Query: 126 GEGEGGAVRDKVVRLLERVGIPEADERIDYYPHQFSGGQRQRVMIAMAIALKPDILIADE 185
                 A R +++  LERVGI  A  R+  YPHQ SGG+RQRVMIAMA+  +P++LIADE
Sbjct: 123 RGMRKEAARGEILDCLERVGIRNAPRRLADYPHQLSGGERQRVMIAMALLTRPELLIADE 182

Query: 186 PTTALDVSVQAQILELLRDLQRETGMALIMITHDLEVAAAMADRIIVMNGGKVVESGKAE 245
           PTTALDVSVQAQIL LLR+L++E  M L+ ITH+L +   +ADR+ VM  G+ VE    +
Sbjct: 183 PTTALDVSVQAQILTLLRELKQELNMGLLFITHNLSIVRQLADRVAVMQNGRCVEQNGCQ 242

Query: 246 DVFTNPSHAYTRRLMSAVPHAD-APKAPRNAAQGEVLLQVAHLSKHYKLGSGPFSPKREF 304
            +F  P H YTRRL+ + P  D  P AP       VLL+  +LS  + +  G      + 
Sbjct: 243 ALFFAPEHPYTRRLLDSEPSGDPVPLAP----DAPVLLRAENLSIAFPIRKGLLRRVVDH 298

Query: 305 -RAVDDVSFTLRRGETVGIVGESGSGKSSIARMLLRLNEPTSGAALFAGEDIFELKGKAL 363
            R V+ VSF LR GET+G+VGESGSGKS+    LLRL   ++GA  F GE +     + +
Sbjct: 299 NRVVNAVSFHLRAGETLGLVGESGSGKSTTGLALLRLIH-SAGAIAFDGEALQGRNRQQM 357

Query: 364 DGFRRRVQMVFQDPFGSMNPRMNVRSIISEPWAIHRDILPRERWNERVVELLELVGLKAE 423
              RRR+Q+VFQDP  S+NPR+NV  II E   +H+  L      + V++ ++ VGL  +
Sbjct: 358 LPLRRRMQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLTPAEREQAVIQAMQEVGLDPQ 417

Query: 424 HAARHPHQFSGGQRQRIAIARALASEPELIVCDEAVSALDVSIQMQVIELLADLRQRLGL 483
              R+P  FSGGQRQRIAIARAL  +P+LIV DE  S+LD ++Q Q++ LL  L+Q+  L
Sbjct: 418 SRHRYPAAFSGGQRQRIAIARALVVKPQLIVLDEPTSSLDKTVQAQILALLKTLQQKHQL 477

Query: 484 SYVFITHDLPIVRQFADRILVMQRGRIVEEGETEALFVSPQHEYTQALL 532
           +Y+FI+HDL +VR    +++V+++G +VE+GE E +F +PQ EYT+ LL
Sbjct: 478 AYIFISHDLRVVRALCHQVMVLRQGEVVEQGECERVFTAPQQEYTRQLL 526



 Score =  186 bits (471), Expect = 3e-51
 Identities = 106/251 (42%), Positives = 154/251 (61%), Gaps = 14/251 (5%)

Query: 307 VDDVSFTLRRGETVGIVGESGSGKSSIARMLLRL--NEPTS---GAALFAGEDIFELKGK 361
           V ++S  +  GET+ +VGESGSGKS  A  +LRL  + P S   G   F G+ +     +
Sbjct: 25  VSELSLQIAVGETLALVGESGSGKSVTALSVLRLLPSPPVSYPTGDIRFHGQSLLHADER 84

Query: 362 ALDGFR-RRVQMVFQDPFGSMNPRMNVRSIISEPWAIHRDILPRERWNERVVELLELVGL 420
            L G R  R+ M+FQ+P  S+NP   +   + E  ++HR  + +E     +++ LE VG+
Sbjct: 85  TLRGVRGNRIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRG-MRKEAARGEILDCLERVGI 143

Query: 421 K--AEHAARHPHQFSGGQRQRIAIARALASEPELIVCDEAVSALDVSIQMQVIELLADLR 478
           +      A +PHQ SGG+RQR+ IA AL + PEL++ DE  +ALDVS+Q Q++ LL +L+
Sbjct: 144 RNAPRRLADYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILTLLRELK 203

Query: 479 QRLGLSYVFITHDLPIVRQFADRILVMQRGRIVEEGETEALFVSPQHEYTQALLRAVPQP 538
           Q L +  +FITH+L IVRQ ADR+ VMQ GR VE+   +ALF +P+H YT+ LL + P  
Sbjct: 204 QELNMGLLFITHNLSIVRQLADRVAVMQNGRCVEQNGCQALFFAPEHPYTRRLLDSEPS- 262

Query: 539 KWLRSDPAPIA 549
                DP P+A
Sbjct: 263 ----GDPVPLA 269



 Score =  169 bits (428), Expect = 2e-46
 Identities = 109/269 (40%), Positives = 165/269 (61%), Gaps = 20/269 (7%)

Query: 3   APDKPIL-RIDKLTVDF-LSEG------DPVRAVDDVSFDVCPGETLVILGESGSGKSVS 54
           APD P+L R + L++ F + +G      D  R V+ VSF +  GETL ++GESGSGKS +
Sbjct: 269 APDAPVLLRAENLSIAFPIRKGLLRRVVDHNRVVNAVSFHLRAGETLGLVGESGSGKSTT 328

Query: 55  TGTVMGLIDCPPGDIVSGSLVFDGTDLSRLDDEGRRELNGRRIAMIFQDPLAYLNPVYTV 114
              ++ LI        +G++ FDG  L   + +    L  RR+ ++FQDP + LNP   V
Sbjct: 329 GLALLRLIHS------AGAIAFDGEALQGRNRQQMLPLR-RRMQVVFQDPNSSLNPRLNV 381

Query: 115 GRQIAEVFESHGEGEGGAVRDK-VVRLLERVGI-PEADERIDYYPHQFSGGQRQRVMIAM 172
            + I E    H      A R++ V++ ++ VG+ P++  R   YP  FSGGQRQR+ IA 
Sbjct: 382 LQIIEEGLRVHQPTLTPAEREQAVIQAMQEVGLDPQSRHR---YPAAFSGGQRQRIAIAR 438

Query: 173 AIALKPDILIADEPTTALDVSVQAQILELLRDLQRETGMALIMITHDLEVAAAMADRIIV 232
           A+ +KP +++ DEPT++LD +VQAQIL LL+ LQ++  +A I I+HDL V  A+  +++V
Sbjct: 439 ALVVKPQLIVLDEPTSSLDKTVQAQILALLKTLQQKHQLAYIFISHDLRVVRALCHQVMV 498

Query: 233 MNGGKVVESGKAEDVFTNPSHAYTRRLMS 261
           +  G+VVE G+ E VFT P   YTR+L++
Sbjct: 499 LRQGEVVEQGECERVFTAPQQEYTRQLLA 527