Pairwise Alignments

Query, 550 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 617 a.a., ABC transporter ATP-binding protein from Herbaspirillum seropedicae SmR1

 Score =  459 bits (1182), Expect = e-133
 Identities = 265/569 (46%), Positives = 354/569 (62%), Gaps = 37/569 (6%)

Query: 1   MNAPDKPILRIDKLTVDFLSEGDPVRAVDDVSFDVCPGETLVILGESGSGKSVSTGTVMG 60
           M  P + +L ++ L+V F +    V AV D+SF V  GETL I+GESGSGKSVS+  +M 
Sbjct: 1   MQQPQR-VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMR 59

Query: 61  LIDCPPGDIVSGSLVF-----DGTDLSRLDDEGRRELNGRRIAMIFQDPLAYLNPVYTVG 115
           LI+   G I SGS+ F        DL++ D+   R + G  IAMIFQ+P+  LNPV+TVG
Sbjct: 60  LIEHGGGKIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVG 119

Query: 116 RQIAEVFESHGEGEGGAVRDKVVRLLERVGIPEADERIDYYPHQFSGGQRQRVMIAMAIA 175
            QIAE    H      A + + +R+LE V IPEA   +  +PHQ SGG RQRVMIAMA++
Sbjct: 120 EQIAESIRLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALS 179

Query: 176 LKPDILIADEPTTALDVSVQAQILELLRDLQRETGMALIMITHDLEVAAAMADRIIVMNG 235
            KP +LIADEPTTALDV++QAQIL+L+R LQ+E  M +I ITHD+ V A +ADR++VM  
Sbjct: 180 CKPSLLIADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCR 239

Query: 236 GKVVESGKAEDVFTNPSHAYTRRLMSAVPHAD-------------APKAPRN-------- 274
           G+ VE      +F  P+H YT+ L++AVP                AP+A           
Sbjct: 240 GEKVEENAVNPLFAAPAHPYTQSLLAAVPRLGSMRGTDKPLRFGIAPQAEARPDLIASEL 299

Query: 275 ------AAQGEVLLQVAHLSKHYKLGSGPFSPKRE-FRAVDDVSFTLRRGETVGIVGESG 327
                 AAQ + +L+V  L+  + + SG F   R+   AV+ VSF L  GET+ IVGESG
Sbjct: 300 QAQAEIAAQRQPILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESG 359

Query: 328 SGKSSIARMLLRLNEPTSGAALFAGEDIFELKGKALDGFRRRVQMVFQDPFGSMNPRMNV 387
            GKS+  R LLRL +   G   F G D+ +L    L   RR +Q +FQDPF S++PRM V
Sbjct: 360 CGKSTTGRSLLRLVDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTV 419

Query: 388 RSIISEPWAIHRDILPRERWNERVVELLELVGLKAEHAARHPHQFSGGQRQRIAIARALA 447
              I EP  +H     +E   ERV  LL  VGL  EH  R+PH+FSGGQRQRI IARALA
Sbjct: 420 GYSIMEPMLVHG---MKEGAQERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALA 476

Query: 448 SEPELIVCDEAVSALDVSIQMQVIELLADLRQRLGLSYVFITHDLPIVRQFADRILVMQR 507
             P++++ DE+VSALDVSIQ Q++ L+ DL+  LG+S++FI+HD+ +V + + R+ VM  
Sbjct: 477 LNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYL 536

Query: 508 GRIVEEGETEALFVSPQHEYTQALLRAVP 536
           G+IVE G   A+F +PQH YT+ L+ AVP
Sbjct: 537 GQIVEIGPRRAIFENPQHPYTRKLMAAVP 565



 Score =  210 bits (535), Expect = 1e-58
 Identities = 129/273 (47%), Positives = 171/273 (62%), Gaps = 19/273 (6%)

Query: 3   APDKPILRIDKLTVDF-LSEG------DPVRAVDDVSFDVCPGETLVILGESGSGKSVST 55
           A  +PIL++  LT  F +  G        V AV+ VSFD+  GETL I+GESG GKS + 
Sbjct: 307 AQRQPILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTG 366

Query: 56  GTVMGLIDCPPGDIVSGSLVFDGTDLSRLDDEGRRELNGRRIAMIFQDPLAYLNPVYTVG 115
            +++ L+D     I  G + F G DL++L     R+L  R I  IFQDP A L+P  TVG
Sbjct: 367 RSLLRLVD-----IAGGKVEFGGRDLAQLPRSELRQLR-RDIQFIFQDPFASLDPRMTVG 420

Query: 116 RQIAEVFESHGEGEGGAVRDKVVRLLERVGI-PEADERIDYYPHQFSGGQRQRVMIAMAI 174
             I E    HG  EG   +++V  LL RVG+ PE  +R   YPH+FSGGQRQR+ IA A+
Sbjct: 421 YSIMEPMLVHGMKEGA--QERVDALLTRVGLTPEHGQR---YPHEFSGGQRQRICIARAL 475

Query: 175 ALKPDILIADEPTTALDVSVQAQILELLRDLQRETGMALIMITHDLEVAAAMADRIIVMN 234
           AL P I+IADE  +ALDVS+QAQI+ L+ DLQ E G++ I I+HD+ V   ++ R+ VM 
Sbjct: 476 ALNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMY 535

Query: 235 GGKVVESGKAEDVFTNPSHAYTRRLMSAVPHAD 267
            G++VE G    +F NP H YTR+LM+AVP AD
Sbjct: 536 LGQIVEIGPRRAIFENPQHPYTRKLMAAVPVAD 568



 Score =  178 bits (452), Expect = 5e-49
 Identities = 107/285 (37%), Positives = 157/285 (55%), Gaps = 20/285 (7%)

Query: 277 QGEVLLQVAHLSKHYKLGSGPFSPKREFRAVDDVSFTLRRGETVGIVGESGSGKSSIARM 336
           Q + +L V HLS  +       + +R   AV D+SF + +GET+ IVGESGSGKS  +  
Sbjct: 3   QPQRVLDVNHLSVRFS------TSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLA 56

Query: 337 LLRLNEPTSGAALFAGEDIFELKGKALDGFRR-----------RVQMVFQDPFGSMNPRM 385
           ++RL E   G             G+ LD  +             + M+FQ+P  S+NP  
Sbjct: 57  IMRLIEHGGGKIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVF 116

Query: 386 NVRSIISEPWAIHRDILPRERWNERVVELLELVGLKAEHAA--RHPHQFSGGQRQRIAIA 443
            V   I+E   +H+  L R       + +LE+V +        RHPHQ SGG RQR+ IA
Sbjct: 117 TVGEQIAESIRLHQG-LGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIA 175

Query: 444 RALASEPELIVCDEAVSALDVSIQMQVIELLADLRQRLGLSYVFITHDLPIVRQFADRIL 503
            AL+ +P L++ DE  +ALDV+IQ Q+++L+  L+Q + +  +FITHD+ +V + ADR++
Sbjct: 176 MALSCKPSLLIADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVV 235

Query: 504 VMQRGRIVEEGETEALFVSPQHEYTQALLRAVPQPKWLRSDPAPI 548
           VM RG  VEE     LF +P H YTQ+LL AVP+   +R    P+
Sbjct: 236 VMCRGEKVEENAVNPLFAAPAHPYTQSLLAAVPRLGSMRGTDKPL 280