Pairwise Alignments

Query, 400 a.a., TRm3 transposase from Sinorhizobium meliloti 1021

Subject, 404 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  309 bits (791), Expect = 1e-88
 Identities = 157/399 (39%), Positives = 247/399 (61%), Gaps = 8/399 (2%)

Query: 2   AIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDDHLDVERLEGGPANRRN 61
           +I+ + ++QL AG+    + GKDG    L +++    L  E+D HL  E  + G  NRRN
Sbjct: 9   SIKNKAIEQLKAGKP---LLGKDGAFAPLLESILNAALEGEMDAHLTEEERQMG--NRRN 63

Query: 62  GSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPD-FDDKIISMYARGMTVREIQ 120
           G  +K V T   ++T++ PRDR  +FDP+ I + +    +   D+II +YA G + REI 
Sbjct: 64  GKMQKQVQTPLGEVTVSTPRDRNSSFDPQFIKKRETILAEGVADRIIGLYAMGNSTREIS 123

Query: 121 GHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDE-GFVRN 179
             +EE  G  VS D IS++TD VL  +  W++R L+  YP+V+ DAI  K+ DE G    
Sbjct: 124 DWMEENLGNRVSADTISSITDRVLPEIKAWKSRMLDSVYPIVWMDAIHYKVTDERGCAVT 183

Query: 180 KAVYVALAVLADGSKEILGLWIEQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEA 239
           +A+Y  L++  +G KE+LG++I + EGA FWL V+ +L+NRG +DILIA +DGLKGFPEA
Sbjct: 184 RAIYNVLSIDREGHKELLGMYISRNEGANFWLSVLTDLQNRGVEDILIACIDGLKGFPEA 243

Query: 240 ITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEAGLKALEAFEEGY 299
           I +V+P T VQ C+VH IR+S+++V  K+++  +  L+ +Y+A + E+    L   +E  
Sbjct: 244 IQSVYPNTAVQLCVVHQIRNSIKYVGSKNQKEFLRDLKCVYQAVNKESAENELLKLDE-K 302

Query: 300 WGQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDE 359
           WG++YP + +SW+ NW+ +  +F +   +R++IYTTN +E  + ++R+  +++G FP D 
Sbjct: 303 WGEQYPVVIRSWQDNWDKLSEYFQYTPVIRKLIYTTNTVEGYHRQIRKVTKNKGVFPSDT 362

Query: 360 AAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERF 398
           A  KL+YL   N  ++W      W     Q A+ FG RF
Sbjct: 363 ALEKLVYLAYRNIRKKWTMPLANWATISQQLAIKFGNRF 401