Pairwise Alignments

Query, 166 a.a., NapF ferredoxin component of periplasmic nitrate reductase from Sinorhizobium meliloti 1021

Subject, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 66.2 bits (160), Expect = 4e-16
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 16/129 (12%)

Query: 35  EACTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPVFT-----GRSQQ 89
           E+C  CG C   CPT  I V + R ++D  +  C  C  C ++CP+         G    
Sbjct: 132 ESCIKCGICERFCPTSAITV-EKRNSIDINLNLCMGCTACEKVCPKSAIKVENEMGEITA 190

Query: 90  FPHVAMIGESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLSVC 149
              +++  ++C+     +C  C + CP  AI +        L +L++++C  CG C   C
Sbjct: 191 ENEISLNNDTCI-----NCMVCSEICPVGAIVYEDG-----LMKLDDKMCIFCGKCEKNC 240

Query: 150 PVAAIGIRE 158
           PV AI I++
Sbjct: 241 PVTAIAIKQ 249



 Score = 52.0 bits (123), Expect = 8e-12
 Identities = 38/143 (26%), Positives = 51/143 (35%), Gaps = 32/143 (22%)

Query: 37  CTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCP----------------- 79
           C  C  C + CP   I+    +   +    +C  C  CA+ CP                 
Sbjct: 48  CIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAINVLEGRAKLEEDN 107

Query: 80  ------EPVFTGRSQQFPHVAMIGESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPE 133
                 E   T R  +     +  ESC+      C  C   CPT AI    R       +
Sbjct: 108 VVYELKEIDVTHRKIRLVKHELDEESCI-----KCGICERFCPTSAITVEKRNS----ID 158

Query: 134 LNEELCTGCGACLSVCPVAAIGI 156
           +N  LC GC AC  VCP +AI +
Sbjct: 159 INLNLCMGCTACEKVCPKSAIKV 181



 Score = 40.0 bits (92), Expect = 3e-08
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 108 CQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLSVCPVAAIGIRE 158
           C+ C + CP +AI+  P    P   E+  E C  C  C   CPV AI + E
Sbjct: 51  CELCYEMCPVDAIK-EPSVKSP--AEILPEKCVKCEICAKTCPVGAINVLE 98



 Score = 38.9 bits (89), Expect = 7e-08
 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 27/113 (23%)

Query: 67  ECTFCGQCAELCPEPVFTGRSQQFPHVAMIGESCLARNRTDCQACRDACPTEAIR----- 121
           +C  C  C E+CP       S + P   ++ E C+      C+ C   CP  AI      
Sbjct: 47  KCIRCELCYEMCPVDAIKEPSVKSP-AEILPEKCV-----KCEICAKTCPVGAINVLEGR 100

Query: 122 ----------------FRPRAGGPFLPELNEELCTGCGACLSVCPVAAIGIRE 158
                              R       EL+EE C  CG C   CP +AI + +
Sbjct: 101 AKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEK 153



 Score = 35.0 bits (79), Expect = 9e-07
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 22  GRVSPPGATAEGLEACTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCP 79
           G ++     +   + C  C  C++ CP   I   D    LD  +  C FCG+C + CP
Sbjct: 186 GEITAENEISLNNDTCINCMVCSEICPVGAIVYEDGLMKLDDKM--CIFCGKCEKNCP 241