Pairwise Alignments

Query, 166 a.a., NapF ferredoxin component of periplasmic nitrate reductase from Sinorhizobium meliloti 1021

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 58.5 bits (140), Expect = 1e-13
 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 28/145 (19%)

Query: 35  EACTGCGRCADACPTHIIRVIDDR------PALDFFIAECTFCGQCAELCPEPVFTGRSQ 88
           + C  CG C + CP   + + +          + +F  +C  CG+C ++CP  +      
Sbjct: 30  KVCQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNNL------ 83

Query: 89  QFPHVAMIGESCLARNRTDCQACRDACPTEAIRFR----PRAGGPFLPE---LNEELCTG 141
                  I    L      C  C DACP   +       P      LP+      E C G
Sbjct: 84  ------KIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVG 137

Query: 142 CGACLSVCPVAAIGIREVEWERAHV 166
           CG C+S CPV A+ I   E E+A V
Sbjct: 138 CGVCISECPVGALSI---EGEKAVV 159



 Score = 57.0 bits (136), Expect = 4e-13
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 35  EACTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCP-EPVFTG------RS 87
           E C GCG C   CP   + +  ++  +D     C +C  CA+ CP   +F        R 
Sbjct: 133 EDCVGCGVCISECPVGALSIEGEKAVVD--KDSCIYCSICAQTCPWNAIFVAGKKSPKRD 190

Query: 88  QQFPHVAMIGESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLS 147
           +     ++  + C+      C  C D CP + I        P       + C  CG C +
Sbjct: 191 KNIVKFSVDSDLCIG-----CGDCTDKCPRDLIVLNEMVAVP------PKGCPACGLCKA 239

Query: 148 VCPVAAI 154
            CPV AI
Sbjct: 240 ACPVDAI 246



 Score = 57.0 bits (136), Expect = 4e-13
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 35  EACTGCGRCADACPTHIIRVIDD----RPALDFFIA----ECTFCGQCAELCPEPVFT-- 84
           + C  CG C  ACP   I ++ +    +P  D  I     +C +CG CA  CP    T  
Sbjct: 229 KGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVV 288

Query: 85  -GRSQQFPHVAMIGESCLARNRTDCQACRDACPTEAIRFRP--RAGGPFLP-ELNEELCT 140
             +  + P      ++   +    C AC  +CP +A+R       G  +   E +  LC 
Sbjct: 289 NPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCD 348

Query: 141 GCGACLSVCP 150
            CG C+  CP
Sbjct: 349 SCGKCIETCP 358



 Score = 49.7 bits (117), Expect = 6e-11
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 23/138 (16%)

Query: 37  CTGCGRCADACPTHIIR---VIDDR------PALDFFIAE-CTFCGQCAELCPEPVFTGR 86
           C GC +C DACP   +    V++        P     + E C  CG C   CP    +  
Sbjct: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE 153

Query: 87  SQQFPHVAMIGESCLARNRTDCQACRDACPTEAI----RFRPRAGGPFLP-ELNEELCTG 141
            ++     +  +SC+      C  C   CP  AI    +  P+     +   ++ +LC G
Sbjct: 154 GEK---AVVDKDSCIY-----CSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIG 205

Query: 142 CGACLSVCPVAAIGIREV 159
           CG C   CP   I + E+
Sbjct: 206 CGDCTDKCPRDLIVLNEM 223



 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 11/53 (20%)

Query: 108 CQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLSVCPVAAIGIREVE 160
           C+AC ++CPTEA++  P            ++C  CG C++VCP  A+ +RE+E
Sbjct: 12  CKACENSCPTEALKLNP-----------FKVCQLCGNCVNVCPNDALNLREIE 53



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 31  AEGLEACTGCGRCADACPTHIIRV------IDDRPALDFFIAECTFCGQCAELCPEPV-- 82
           A   + C  CG C  +CP   +R+        +   ++F    C  CG+C E CP  +  
Sbjct: 304 ANEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLK 363

Query: 83  FTGRSQQ 89
            TG+S++
Sbjct: 364 LTGKSEK 370



 Score = 23.9 bits (50), Expect = 0.003
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 133 ELNEELCTGCGACLSVCPVAAI 154
           ++N E C  C AC + CP  A+
Sbjct: 3   KINTEDCYMCKACENSCPTEAL 24