Pairwise Alignments

Query, 166 a.a., NapF ferredoxin component of periplasmic nitrate reductase from Sinorhizobium meliloti 1021

Subject, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 47.0 bits (110), Expect = 2e-10
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 21/100 (21%)

Query: 68  CTFCGQCAELCPEPVFTGRSQQFPHVAMIGESCLARNRTDCQACRDACPTEAI-----RF 122
           C  C +C E+CP    T  S  FP V  I   C+      C  C + CP +AI     R 
Sbjct: 38  CILCNRCLEVCP---VTAISSNFPEVPDIDNKCVY-----CNTCVETCPVDAIKITKTRV 89

Query: 123 RPRAGGPFLP--------ELNEELCTGCGACLSVCPVAAI 154
           R   G   +         + N + C  C  C   CP  AI
Sbjct: 90  RVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAI 129



 Score = 46.6 bits (109), Expect = 2e-10
 Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 35  EACTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPV--FTGRSQQFPH 92
           E C  C RC + CP  +  +  + P +     +C +C  C E CP      T    +   
Sbjct: 36  ELCILCNRCLEVCP--VTAISSNFPEVPDIDNKCVYCNTCVETCPVDAIKITKTRVRVEQ 93

Query: 93  VAMIGESCLARNRTD--------CQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGA 144
             +I E+ L   + D        C  C   CP  AI     +        + + C  CG 
Sbjct: 94  GNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAI-----SESDDNISFDMDKCVLCGH 148

Query: 145 CLSVCPVAAI 154
           C  +CP  AI
Sbjct: 149 CEEICPAKAI 158



 Score = 38.5 bits (88), Expect = 5e-08
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 24/101 (23%)

Query: 37  CTGCGRCADACPTHIIRVIDDR----------------PALDFFIAECTFCGQCAELCPE 80
           C  C  C + CP   I++   R                  LD+   +C  C  C + CP 
Sbjct: 67  CVYCNTCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCP- 125

Query: 81  PVFTGRSQQFPHVAMIGESCLARNRTDCQACRDACPTEAIR 121
             F   S+   +++   + C+      C  C + CP +AI+
Sbjct: 126 --FGAISESDDNISFDMDKCVL-----CGHCEEICPAKAIK 159



 Score = 34.7 bits (78), Expect = 8e-07
 Identities = 14/22 (63%), Positives = 15/22 (68%)

Query: 133 ELNEELCTGCGACLSVCPVAAI 154
           E+N ELC  C  CL VCPV AI
Sbjct: 32  EINPELCILCNRCLEVCPVTAI 53



 Score = 25.0 bits (53), Expect = 6e-04
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 34  LEACTGCGRCADACPTHIIRV 54
           ++ C  CG C + CP   I++
Sbjct: 140 MDKCVLCGHCEEICPAKAIKL 160