Pairwise Alignments

Query, 399 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 82/347 (23%), Positives = 147/347 (42%), Gaps = 51/347 (14%)

Query: 82  AGETQLAQIE-PAP---PAFLDV-----RTEAELQAAVEAARAAHNLAAAELNKAKADLT 132
           AG  +  QI  PAP   PA  ++      ++      V AA+ A    A  ++    D+ 
Sbjct: 27  AGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRAD--LAFRISGRLTDIA 84

Query: 133 FAEGERARARQLI------ERRTI---SQRTLEDAERSYHVAQANLATAEAALKVREHEL 183
             EG++ +  QL+      + +T    +Q  L++ E+ Y  A+A     +A  K    EL
Sbjct: 85  VKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKA---EL 141

Query: 184 HQARSRL-LSRQEIRSLREDCECMPVTAPVSGVVLQVMRRSEGVVEAGTPLLDIGDPTDL 242
            +  +R  L++  +   +   E   +TAP  GV+ +    +   V+A   ++ + D  DL
Sbjct: 142 DKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDL 201

Query: 243 EIVVNFLSEDAVRIRPGQRAIITDWGGEDLNAVV-RRIEPFGQTQVSALGIEEQRVDVIL 301
           E+ +       +      RAI       +L+A+  ++ +   +T  +    + Q   V+L
Sbjct: 202 EVAIEIPHRVMLSGVRNTRAIA------ELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVL 255

Query: 302 DFADPTESWRSLGHGYRV----DVQVILF------EGEVLKLPLGALF--RQGEEWAVFV 349
            F D          G+RV      +VI        E  ++ LPL AL    QG+++   V
Sbjct: 256 GFEDLK--------GFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVV 307

Query: 350 AAEGRARLRPVAVSQRNSLAVEIREGLVPGERVILYPSDRIKDGAAI 396
            A+ +A  R V +       V I + L PGE+VI+     +++G  +
Sbjct: 308 NAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354