Pairwise Alignments

Query, 296 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 423 a.a., spermidine/putrescine transport system permease protein PotB from Phaeobacter inhibens DSM 17395

 Score =  173 bits (439), Expect = 5e-48
 Identities = 92/229 (40%), Positives = 141/229 (61%), Gaps = 2/229 (0%)

Query: 50  LIALSFSGGTFSHYRRIFTEPLHLEVLFSTIEVAFVVTVAGLLLGFPVAYLMARLSRGLA 109
           L A  F  G      R   E ++  +   T+ ++  +TV+ ++LG+PVA+++A L    A
Sbjct: 177 LNAADFQKGAEGAELRPENERIYGTLFLRTLIMSLAITVSCIVLGYPVAWILANLPSRTA 236

Query: 110 MAVAACVFVPLWTSVLIRSYAWVVLLQRNGIVNKLLADTGVT--EGPLKLIYTQGAVILA 167
             +   V +P WTS+L+R+ AW V+LQ+ G++N  L   G+   +  L +I  Q   I+A
Sbjct: 237 NLLMILVLLPFWTSLLVRTSAWKVMLQQQGVINDTLVWLGLVADDARLVMINNQFGTIVA 296

Query: 168 MTHVLMPFMILPIYSALRALPPDYVRAARNLGAGPIRAFVTVTLPLSLPGIFAGSVMCFV 227
           MTH+L+PFMILP+YS ++ + P Y+RAA++LGA    AF  V  P S+PGI AGS++ F+
Sbjct: 297 MTHILLPFMILPMYSVMQTINPSYLRAAKSLGATNWTAFWRVYFPQSVPGIGAGSILVFI 356

Query: 228 LALGFYITPALVGGPSSMLMATLIGQQTTVLLDWPFAAALSTVLLAVTL 276
           LA+G+YITP LVGG   + ++  I    +  L+W  AAAL ++LL V L
Sbjct: 357 LAIGYYITPELVGGTKGVFISNRIAFHISQSLNWGLAAALGSILLVVVL 405



 Score = 23.5 bits (49), Expect = 0.009
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 26 IASMALVTPLLAAMLAGFLYPVARLI 51
          I ++ L+ PLL  +L  F+ P+A ++
Sbjct: 31 IRALMLIAPLLLFVLLTFILPIADML 56