Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  343 bits (879), Expect = 6e-98
 Identities = 274/1059 (25%), Positives = 481/1059 (45%), Gaps = 65/1059 (6%)

Query: 2    RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61
            ++  L++ + FS +   S    L      MG+ A+ + D  +L G+V+    +   G++ 
Sbjct: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64

Query: 62   VVGCRLDLQDG------MSILVYPTDRAAYSRLTRLLTLGKGRGG-KANCIIHFDDVALY 114
            ++G    LQ          + +   +   Y  LT L++    RG  +   +I    +  +
Sbjct: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124

Query: 115  AEGLIGILVPDLADEVCAV-------QLRKIAEV----FGDRAYVSLCLRRRPNDQLQLH 163
            AEGLI +L    + EV          Q+ +  E     F D  Y+ L    R +++  LH
Sbjct: 125  AEGLI-VLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLH 183

Query: 164  ELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADRYLKPP 223
               ++A ++ +  + TN+V+F      +  ++   I  G T++D    +     +YL+  
Sbjct: 184  FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 243

Query: 224  EEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALILGMTAQQSLQHYTWEGVRA 283
             EM  LF   PEALA ++EI +RC  ++    Y  P      GM  +  L   + EG+  
Sbjct: 244  AEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLVMKSREGLEE 302

Query: 284  RYPEGLPT---------HVEKTIRHELALIETMKYAPYFLTVFSIVRYARSQGI-LCQGR 333
            R     P            ++ ++ EL +I  M +  YFL V   +++++   I +  GR
Sbjct: 303  RLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362

Query: 334  GSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTY 393
            GS A S V Y L IT +DP   DLLFERF++ ER   PD DVDF  ++R++VI  + + Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422

Query: 394  GHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSS------GIWSWSETVGERQVR 447
            G D  +   T     AK  IRDVG+ L  P   +  +S       G+      + E  ++
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482

Query: 448  ELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIEPATMADRQVIE 507
            E  L   D  +   +   + L G  RN  +H GG V++   + D  PI      +  V +
Sbjct: 483  E--LYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540

Query: 508  WDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHE----DIDLATIPQEDPATYAMI 563
            +DK+D+E    +K D L L  LT +  A  L++    +     + +  IP +D  ++  +
Sbjct: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600

Query: 564  RKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKEK 623
            + A T   FQ+ESR    ++ R++P  F D++  VA+ RPGP+Q  MV  ++ R+ G+E 
Sbjct: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660

Query: 624  VEYPTPE-----LEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGG 678
            + YP  +     L+ +L  T G+ L+QE  M++A V +G+T G AD LR++M   K    
Sbjct: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEE 719

Query: 679  VSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCYFP 738
            +++ +     G  +NG   E A K F  +E F  YGF +SH+A++AL++Y + ++K ++P
Sbjct: 720  MAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 779

Query: 739  DVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVRLG 798
              F AA++ +          +V + +  G+ V P  IN   +      +D +G  A+  G
Sbjct: 780  AEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRF---NVDDNG--AIVYG 834

Query: 799  MRLVRGLATADAARIVAARADE-------PFTSVDDMWRRSGVPVASLVELAEADAFLPS 851
            +  ++G+       I+ AR           F +  D+ + +   +  L+     D   P 
Sbjct: 835  IGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPH 894

Query: 852  LSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQEEPEVELRQMTDGQNVVE---DY 908
             +        A++A            AD         EE E +  Q+ +    V    + 
Sbjct: 895  RAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGER 954

Query: 909  SHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPGSAKG--VM 966
               GL L  HP+     +L K       +A      Q L  AGLV+  +   + +G  + 
Sbjct: 955  ETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIG 1014

Query: 967  FITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRI 1005
             +T++D +G   ++++ +  +R    +    ++ ++G++
Sbjct: 1015 LMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV 1053