Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 870 a.a., DNA polymerase III subunit alpha from Synechococcus elongatus PCC 7942

 Score =  291 bits (745), Expect = 1e-82
 Identities = 219/766 (28%), Positives = 371/766 (48%), Gaps = 62/766 (8%)

Query: 1   MRYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATG-L 59
           M +  L + + +S L  AS   +L A A+ +G+ A+ + D   + G +  L+  +  G +
Sbjct: 1   MSFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNI 60

Query: 60  RLVVGCRLDLQDG-----------MSILVYPTDRAAYSRLTRLLTLG-----KGRGGKAN 103
           R ++G  + + +               +V   ++  Y  L +L ++      KGRG  A 
Sbjct: 61  RPIIGNEMYVINSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHLQGFKGRGIFAR 120

Query: 104 CIIHFDDVALYAEGLI------GILVPDLADEVCAVQLRKIA----EVFGDRAYVSLCLR 153
             I  + +  Y EGLI      G  +P    +      R++A    E FG+  Y+ +   
Sbjct: 121 PCIDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYLEIQDH 180

Query: 154 RRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERE 213
             P D++   E+  +A +  ++ + TND  F      +  D + CI+TG  +  V  +R 
Sbjct: 181 GSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLV--VEDKRL 238

Query: 214 RHAD-RYLKPPEEMARLFPAY------PEALARTMEI---VERCRFSLEELVYQYP---- 259
           R++   YLK  EEM +LF  +       +A+A T+ I   +E      E  +  +P    
Sbjct: 239 RYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPVPDG 298

Query: 260 -EEALILGMTAQQSLQHYTWEGVRARYPEGLPTHVEKTIRHELALIETMKYAPYFLTVFS 318
             E   +   A+Q L     E +     E         + +E+ ++  M +A YFL V+ 
Sbjct: 299 YNEETYMAEVARQGLA----ERLNCDRYEDCEEAYRDRLEYEIKMMHEMGFASYFLVVWD 354

Query: 319 IVRYARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDF 377
            +++AR   I +  GRGSAA S V Y +GIT+IDP  + LLFERF++ ER   PDID DF
Sbjct: 355 YIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDIDTDF 414

Query: 378 EHERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIWSW 437
             ++R++VI ++ K YG D+ A   T  R  +K  ++DV + LD+P      ++  I   
Sbjct: 415 CIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPVA 474

Query: 438 SETVGERQVRELGLNP---------DDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDR 488
                + +V      P          D R+   + +A ++ G  +    H  G V++   
Sbjct: 475 RGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHAAGVVISAVP 534

Query: 489 LDDLVPIEPATMADRQVI-EWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHEDI 547
           LD++VP++     D QVI ++  +DIEA   LK+D L L  LT + KA  L+ E   + I
Sbjct: 535 LDEIVPLQRNN--DGQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETSGQAI 592

Query: 548 DLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQ 607
           D   +P +DP TY ++ K D  G FQ+ES     ++  +KP    D+   +A+ RPGP+ 
Sbjct: 593 DPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRPGPLD 652

Query: 608 GDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLR 667
             ++  ++ R+ G+E ++Y    L+ +L++T G+ ++QE  M++A    G+T GEAD LR
Sbjct: 653 AGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYTLGEADLLR 712

Query: 668 KSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSY 713
           ++M   K +  V + +   V G  +NG  ++ A + F Q+  F  Y
Sbjct: 713 RAMGKKKMSEMV-KHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757