Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1127 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

 Score =  986 bits (2548), Expect = 0.0
 Identities = 529/1084 (48%), Positives = 706/1084 (65%), Gaps = 53/1084 (4%)

Query: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASR------- 55
            YAEL VTT+F+FL  AS  EEL   A  +G+ AL + D NSLAG+VRA  A +       
Sbjct: 28   YAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKRDPQ 87

Query: 56   -ATGLR-----------------------------LVVGCRLDLQD-GMSILVYPTDRAA 84
             A  +R                             L+VGCRL LQ+  +  +  P DR+A
Sbjct: 88   DALKIRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALPCDRSA 147

Query: 85   YSRLTRLLTLGKGRGGKANCIIHFDDVALYAEGLIGILVPDLADEVCAVQLRKIAEVFGD 144
            Y RL RLLTLGK R  K  C+++ +D+    +G+I I +P          ++KI   F +
Sbjct: 148  YKRLARLLTLGKRRAEKGQCLLYAEDMIDACKGMILIALPKETLSNAVSDIQKIGRQFPN 207

Query: 145  RAYVSLCLRRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMT 204
              ++    R   +DQ  L     LA       +   DVL H   RRQL DV+TC+R  + 
Sbjct: 208  HVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHRANRRQLADVLTCMRENIN 267

Query: 205  IDDVGFERERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALI 264
            IDD+G     +A+R LK   +MAR+F  +P AL RT EI  RC F L EL Y+YP E   
Sbjct: 268  IDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANRCNFDLSELSYEYPHEEAE 327

Query: 265  LGMTAQQSLQHYTWEGVRARYPEGLPTHVEKTIRHELALIETMKYAPYFLTVFSIVRYAR 324
             G T Q  L+    EG++ RYP+G P    K +  EL+ ++ +++  YFLTV  IV++AR
Sbjct: 328  -GETPQDRLERLAREGLKRRYPDGPPDRAIKLMEKELSAVKDLEFPAYFLTVHDIVQFAR 386

Query: 325  SQGILCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERREE 384
            S+GILCQGRGSAANS +CY+LGIT + P+   ++FERFVS+ R EPPDIDVDFEHERREE
Sbjct: 387  SKGILCQGRGSAANSILCYLLGITDVSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREE 446

Query: 385  VIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIWSWSE-TVGE 443
            VIQWIY+ YG  +A LC+TV  +R + AIR+VGK + L +D+   LS  IW  S  +V  
Sbjct: 447  VIQWIYQKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTAGLSGQIWGMSNGSVDL 506

Query: 444  RQVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIEPATMADR 503
             ++RELGLN +DRRL  T+RL  +++G PR+LSQH GGFV+T  RLD+L PIE A M +R
Sbjct: 507  ERIRELGLNLEDRRLMQTIRLIGEIIGFPRHLSQHVGGFVITSGRLDELAPIENAAMENR 566

Query: 504  QVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHEDIDLATIPQEDPATYAMI 563
             VI WDKDDI+AL+ LKVD+LALGMLTC+ KAFAL+ +H++    +ATIPQ+D ATY M+
Sbjct: 567  TVICWDKDDIDALRILKVDILALGMLTCIRKAFALMQQHENITHSIATIPQKDEATYDML 626

Query: 564  RKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKEK 623
              AD +G FQ+ESRAQM+ LPRM+PR FYDLVI+VAIVRPGPIQGDMV PY+RRR G EK
Sbjct: 627  CAADAVGVFQVESRAQMNFLPRMRPREFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEK 686

Query: 624  VEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVSRFK 683
             +   P+LE V  +T GVPLFQE A+++A+V AGF+  EAD LR+S+A+F+  G +S+++
Sbjct: 687  PDPFGPQLEQVTRRTKGVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRMGTISKYR 746

Query: 684  DKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCYFPDVFCA 743
            DK + GM++N Y++E AE+ F Q+EGF  YGFPESHAA+FA++AY S ++KC+ P +F  
Sbjct: 747  DKFIAGMLKNKYSREIAERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFAC 806

Query: 744  ALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVRLGMRLVR 803
            ALLNSQPMGFYAPAQIVRD R+HG+EVRPIC+N+S+WD  LE     G  A+RLG R ++
Sbjct: 807  ALLNSQPMGFYAPAQIVRDVRDHGIEVRPICVNQSQWDNSLER-RPDGTLALRLGFRQIK 865

Query: 804  GLATADAARIVAARADEPFTSVDDMWRRSGVPVASLVELAEADAFLPSLSLERRDALWAI 863
            G    D   I+AAR +  +   + +W R+G+  A+L  LAEADAF  S+ + RRDALW +
Sbjct: 866  GFKEDDTGWIIAARGN-GYIDPEHLWLRAGLAPAALERLAEADAF-SSMGISRRDALWQV 923

Query: 864  KAL-RDEPLPLFTAAADREARAIAEQEEPEVELRQMTDGQNVVEDYSHTGLTLREHPLRF 922
            K++    PLPLF    D EA       EP V L +M  G+ VVEDY    L+LR HP+  
Sbjct: 924  KSITTPAPLPLFNDQLDGEA-----INEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMEL 978

Query: 923  MRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPGSAKGVMFITIEDETGIANIVVW 982
            +R  L     +TC   +     Q +   GLV+ RQRPG+A GV+F+T+EDETG+ N+VVW
Sbjct: 979  LRPTLPG---LTCNDQLIKAPLQRVSVGGLVITRQRPGTASGVIFLTLEDETGVCNVVVW 1035

Query: 983  PKLFERSRRVVLGASMMAINGRIQREGEVVHLVAQQLFDLSADLSSLAE-RDGAFRPPTG 1041
             K++ER RR+V+G  ++ + G +QREG +VH++AQ + D SA LS L    DGA +    
Sbjct: 1036 KKIYERFRRIVMGGRLLCVTGYLQREGTIVHVIAQHIEDESARLSELGHPLDGAIQSEGP 1095

Query: 1042 RGDE 1045
            R D+
Sbjct: 1096 RADD 1099