Pairwise Alignments

Query, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

Subject, 1477 a.a., DNA polymerase III subunit alpha from Pedobacter sp. GW460-11-11-14-LB5

 Score =  324 bits (830), Expect = 3e-92
 Identities = 256/916 (27%), Positives = 428/916 (46%), Gaps = 91/916 (9%)

Query: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIV----------RALE 52
            +  L   T FS L++  S  +L   A    + A+ + D  ++ G            +A E
Sbjct: 261  FVHLHNHTQFSVLQSTISIPDLVKAAAAQKMPAVAMTDHANMMGAFHFVNNVLNHNKAAE 320

Query: 53   ASRATGLRL-----------VVGC----------RLDLQDGMSILVYPTDRAAYSRLTRL 91
            A  A  +             +VG           R    +G  +++   ++  Y  L ++
Sbjct: 321  AKNAAAIEAGERPTEVVMTPIVGVEFFVCNNHLDRTAKDNGYQMVLLAKNKKGYHNLAKM 380

Query: 92   LTLGKGRGGKANCIIHFDDVALYAEGLI---GILVPDLADEVCAVQLRKIAE-------V 141
             ++   +G      I  + +  Y + +I   G L  ++++++  +   +  E       +
Sbjct: 381  SSIAYTKGFYYVPRIDREVIEQYKDDIIVLSGNLSGEISNKILNMGESQAEEALIWWKNM 440

Query: 142  FGDRAYVSLCLRRRPNDQLQLHE-LTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIR 200
            FGD  YV + +R    D+ +++E L  LA KH VK + TN+  +         D++ C++
Sbjct: 441  FGDDFYVEV-MRHNQEDEDRVNESLIALARKHAVKLVATNNTYYINKKDANAHDILLCVK 499

Query: 201  TG-MTIDDVGFERER-----HADRYLKPPEEMARLFPAYPEALARTMEIVERC---RFSL 251
             G      +G  R       + + Y K  +EM  LF   PEA+    EIV++    + + 
Sbjct: 500  DGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKSLFADLPEAIVNIKEIVDKIEIYKLAR 559

Query: 252  EELV--YQYPEEALILGMTAQ-------QSLQHYTWEGVRARYPEGLPTHVEKTIRHELA 302
            E L+  +  PEE L+    A        + L+H T+EG + RY    P   E+ +  EL 
Sbjct: 560  EVLLPKFDIPEEFLVAEDEADGGKRGENKFLRHLTYEGAKKRYGVLTPEVTER-LDFELQ 618

Query: 303  LIETMKYAPYFLTVFSIVRYARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFER 361
             IE   Y  YFL V   +  AR + + +  GRGSAA S V Y L IT+IDP   DLLFER
Sbjct: 619  TIEKTGYPGYFLIVQDFIAEARRRDVSVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFER 678

Query: 362  FVSQERDEPPDIDVDFEHERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALD 421
            F++ +R   PDID+DF+ E R  V++++   YG  + A   T     AK +IRD  + LD
Sbjct: 679  FLNPDRVSMPDIDIDFDDEGRGRVMEYVIGKYGSSQVAQIITYGTMAAKSSIRDTARVLD 738

Query: 422  LP----EDLIRTLSSGIWSWSETVGERQVRELGLNPDDRRLTL--------------TLR 463
            LP    + + + + +   +   T+ E+ ++E  L PD+    +              T++
Sbjct: 739  LPLFEADKIAKLIPNMKLAKIFTLDEKTLKE-ALRPDEYERVVELKNLGGLKDLSAETIQ 797

Query: 464  LAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDV 523
             AQ L G+ RN   H  G ++T   + + VP+  A  +D  V ++D   +E+   LK+D 
Sbjct: 798  QAQILEGSLRNTGIHACGVIITPSDITNFVPVSTAKDSDLYVTQFDNSVVESAGLLKMDF 857

Query: 524  LALGMLTCMAKAFALISEHKHEDIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSML 583
            L L  LT +     L+ +    D+D    P +D  TY + ++ +T+G FQ ES      +
Sbjct: 858  LGLKTLTLIKDTVKLVKKRFGIDLDPDNFPIDDVLTYELFQRGETIGIFQYESPGMQKYM 917

Query: 584  PRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPL 643
              +KP  F DL+   A+ RPGP+  + +  ++RR+ G+E+++Y     E  L +T G+ +
Sbjct: 918  KELKPTVFDDLIAMNALYRPGPM--EYIPSFVRRKNGEEEIKYDLDACEEYLKETYGITV 975

Query: 644  FQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKT 703
            +QE  M ++   AGFT GEAD LRK+M   K    + + K K V      G+     EK 
Sbjct: 976  YQEQVMLLSQKLAGFTKGEADVLRKAMGK-KQKDVLDKMKPKFVKQAAEKGHDATTLEKI 1034

Query: 704  FSQLEGFGSYGFPESHAASFALIAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDA 763
            +   E F SY F +SH+  +A IAY + Y+K ++P  + AA+L++        A  + + 
Sbjct: 1035 WKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSDIKQVAFFMEEC 1094

Query: 764  REHGVEVRPICINRSRWDCMLEPIDGSGGHAVRLGMRLVRGLATADAARIVAAR-ADEPF 822
            R+  V V    +N S    +   ++  G   VR GM  V+G+       I+  R A+ P+
Sbjct: 1095 RQMSVTVLGPDVNESD---LKFSVNAKG--EVRFGMSAVKGVGEKAVESIIEERLANGPY 1149

Query: 823  TSVDDMWRRSGVPVAS 838
             +V D  +RS   + +
Sbjct: 1150 GNVYDFAKRSNTRIVN 1165