Pairwise Alignments

Query, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 298 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  109 bits (272), Expect = 9e-29
 Identities = 87/303 (28%), Positives = 143/303 (47%), Gaps = 22/303 (7%)

Query: 1   MRFRGLDLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGREL 60
           MR + +DLNL V  DA+ TER LT AA R+ ++QPA+S A++RLRT   D LF    + +
Sbjct: 1   MRLQNVDLNLFVVFDAIYTERNLTRAAERLCITQPAVSNALSRLRTSLNDPLFIRTPKAM 60

Query: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVA 120
           +PTP AE +   VR+AL  +  S+   D  +P  ++  F++ + D         ++  + 
Sbjct: 61  MPTPVAENMIGQVREALKLLSSSMHLGDSFDPLLAEHHFQLGMFDVTEETMLPSLLAALQ 120

Query: 121 REAPGVSFELLPLDDDPHELLRR---GDVDFLI------FPDVFMSSAHPKAKLFDEALV 171
             AP +S    P+  +  E+L+    G +D  I       PD++    HP   L     V
Sbjct: 121 VHAPRLSISSYPVSRE--EMLKEFVSGRLDLAIDAPIVTHPDLY---HHP---LVTVPYV 172

Query: 172 CVGCPTNKKLLGNISFETYMSMGHVAAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTL 231
           C+    + ++   +S E Y+++ HV     R+    V+   L   G +R I++       
Sbjct: 173 CLVRKDHPEVGDTLSLEQYLALSHVHVSSRRQGVGYVDA-ALNRLGKHRNIQVRTKHHQA 231

Query: 232 IPRLLSGTNRIATLPLRLVKYFEQTIPLRIVTSPLPPLFFTEAIQWPALHNTDPGNIWLR 291
            P+L++ TN   T+P  L K       L+++  P         + W    + D  N WLR
Sbjct: 232 APKLVAETNLATTVPESLAK----NTDLKVLKLPFEVEPIEWHLYWHRSADQDNANRWLR 287

Query: 292 EIL 294
           E +
Sbjct: 288 EFI 290