Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 303 a.a., Transcriptional regulator from Pseudomonas stutzeri RCH2

 Score =  117 bits (293), Expect = 3e-31
 Identities = 81/307 (26%), Positives = 150/307 (48%), Gaps = 6/307 (1%)

Query: 1   MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGREL 60
           M    +DLNL +  DA+ T+ ++T A + + ++QPA+S+A+ARLR  F D LF    + +
Sbjct: 1   MNLNKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALARLRETFNDPLFVRTAQGM 60

Query: 61  ITTPRAEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVA 120
           + TP A+ +   +R+AL  ++ S+     F+PAQ+++ FRI ++D    V    + +R+ 
Sbjct: 61  VPTPMAQNIIGPVRNALQLLRVSVQESRTFSPAQANKTFRISMTDLTEAVMLPPLFQRLR 120

Query: 121 REAPGVSFE-LLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNE 179
           R AP V  E +L       + L  G +DF +   +         KL +   +      + 
Sbjct: 121 RLAPNVKIESMLAKRRETTKELAAGRLDFAMDAPLNTDPQVRHVKLLEDRYICAMRRGHP 180

Query: 180 QLLGDLSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGT 239
                L+ E+Y+S+ H+     R+    V+   L + G +R+I L    + +   ++  T
Sbjct: 181 LAKDKLTLEQYLSLSHIHISSRRSGLGLVD-LALGKMGLQRKIALRSQHYLMATQVIDQT 239

Query: 240 KRIAIIPLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREILLDEAA 299
                +P R    FA+   L  V  P+ +      + W    ++D A+ WMRE +++ A 
Sbjct: 240 DMAVTVPER----FARRHNLHQVDLPVDIQPLETHIYWHESTDQDPANRWMREQMIEIAQ 295

Query: 300 RIAAPRE 306
           ++ A ++
Sbjct: 296 QVTAQQD 302