Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 309 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (266), Expect = 5e-28
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 3/293 (1%)

Query: 1   MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGREL 60
           +  + +DLNLL  L+ L+  + ++ AA+++N+SQPA+S A+ RLR  F D L      E 
Sbjct: 6   INLRSIDLNLLTILEKLLIHKHISQAAQALNMSQPAVSRALMRLREQFGDPLLVKVKNEY 65

Query: 61  ITTPRAEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVA 120
             T + E L   +   L  I+  ++  D F+P      F I   DF  ++   K++ R  
Sbjct: 66  RLTAKGERLCSELERTLNTIRHMLVD-DKFDPMHYSGVFTIGALDFEMMMIVPKLLARFQ 124

Query: 121 REAPGVSFELLPPDD-NPDELLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNE 179
           + AP +  +++P +   P         D L++      +   K +LF+     V C  + 
Sbjct: 125 QRAPNLKLQIVPYNAYMPLHDYLEKVADLLLYSTDESPTNVFKQRLFNDNYAVVMCRNHP 184

Query: 180 QLLGDLSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGT 239
                ++ E Y    HV    G  L  +     L +  Y+R +   +P F+++P LL  T
Sbjct: 185 LANQPITLESYCQSRHVIIS-GNGLGKTDMDHELKKLNYQREVVASLPHFSMVPELLINT 243

Query: 240 KRIAIIPLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMRE 292
             IA +P RL  H  +   + +   P     F     W  +H+      W+R+
Sbjct: 244 DLIATLPRRLVTHLGQRYEITVADLPFYTADFRVEQFWHLIHHSSPIHQWVRQ 296