Pairwise Alignments

Query, 105 a.a., FdxB ferredoxin III from Sinorhizobium meliloti 1021

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 42.7 bits (99), Expect = 4e-09
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 3   SSFVTRDGSRWMPKYLSAIDGATCIGCGRCFKVCSREVMHLHGIDDVGEILGPFDGEEDD 62
           S  ++ + +    K +   D  +CI CG C + C   V+           +G    E  +
Sbjct: 61  SDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLE----------MGTLRKEAKE 110

Query: 63  FGGELNRMIMVVDSRGRCIGCGACARVCPRDCQTH 97
               + ++I ++     C+ CG C   CP D  +H
Sbjct: 111 LLWNVPKIINLLIDEEVCVSCGTCENACPVDAISH 145



 Score = 36.6 bits (83), Expect = 3e-07
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 19/88 (21%)

Query: 18  LSAIDGATCIGCGRCFKVC--------------SREVMHLHGIDDVGEILGPFDGEEDDF 63
           L  ID   C+ C  C K C              S ++     I    E LG    E+ D 
Sbjct: 150 LYEIDVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDV 209

Query: 64  GGELNRMIMVVDSRGRCIGCGACARVCP 91
             E+ R++  +     CIGCG C  VCP
Sbjct: 210 IAEIPRIVPSL-----CIGCGNCVDVCP 232



 Score = 26.9 bits (58), Expect = 2e-04
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 72 MVVDSRGRCIGCGACARVCPRD 93
          ++ D   +CI C AC   CP D
Sbjct: 41 VIFDLPEKCISCSACKESCPSD 62



 Score = 25.8 bits (55), Expect = 5e-04
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 26  CIGCGRCFKVCSREV----MHLHGIDDVGEILGPFDGEEDDFG-----GELNRMIMVVDS 76
           CIGCG C  VC   +    + +      G+ L          G      +      +VD 
Sbjct: 221 CIGCGNCVDVCPGSIDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDE 280

Query: 77  RGRCIGCGACARVC 90
             +CIGC  C R C
Sbjct: 281 E-KCIGCRICYRSC 293



 Score = 25.0 bits (53), Expect = 0.001
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 22/73 (30%)

Query: 21  IDGATCIGCGRCFKVCSREVMHLHGIDDVGEILGPFDGEEDDFGGELNRMIMVVDSRGRC 80
           +D   CIGC  C++ C+     L   +     + P                        C
Sbjct: 278 VDEEKCIGCRICYRSCNVPEAILISKETNLPYINP----------------------EYC 315

Query: 81  IGCGACARVCPRD 93
           + CG C   CP D
Sbjct: 316 VRCGLCQNACPVD 328