Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 305 a.a., Transcriptional regulator from Pseudomonas stutzeri RCH2

 Score =  122 bits (306), Expect = 1e-32
 Identities = 100/307 (32%), Positives = 139/307 (45%), Gaps = 40/307 (13%)

Query: 4   RGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGRELIPT 63
           R +DLNLL+  + LM ER +T AA ++ L QPA+SAA+ARLRT F D LF   GR + PT
Sbjct: 7   RRVDLNLLIVFETLMHERSVTRAAEKLFLGQPAISAALARLRTLFDDPLFVRTGRSMEPT 66

Query: 64  PRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLAREA 123
            RA  +A  +  AL  I  +V +    +PA S + FRI L+D +       ++ RL  EA
Sbjct: 67  ARALEIAKLLSPALDSISTAVSSASTFDPATSSQVFRIGLTDEVEFALLPPLLRRLRAEA 126

Query: 124 PGVSFELLPLDDDPYELLRRGDVDFLVLPDLFMSSAHPKAKLFAEALVCVGCPTN----- 178
           P V             ++RR   ++L++P L  S        + E L     P N     
Sbjct: 127 PDVVL-----------VVRR--ANYLLMPGLLASGEISVGVCYTEEL-----PANSKRKV 168

Query: 179 -----------EQLLGELSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVP 227
                      + + G LS E Y S  H    F   L    ++ L L HG KR+V L VP
Sbjct: 169 LRRPKPMLLRADSIPGRLSMEDYCSRPHAMVSFAGDLNGYIDEELAL-HGCKRKVVLAVP 227

Query: 228 GFTLIPPLLPHTNRIAIIPLRLVKYFEQTIPLRIVKHPLP---PLWFTEAVQWPALHNKD 284
            F  +  LL  T+ IA +P            +R    PLP      F  ++ W    + D
Sbjct: 228 QFNGLASLLAGTDIIATVPDYAAAALAANGGVR--AEPLPFQTSQDFELSMAWRGAQDND 285

Query: 285 PGNIWMR 291
           P   W+R
Sbjct: 286 PAERWLR 292