Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 309 a.a., transcriptional regulator, LysR family from Pseudomonas syringae pv. syringae B728a

 Score =  119 bits (298), Expect = 9e-32
 Identities = 91/304 (29%), Positives = 145/304 (47%), Gaps = 10/304 (3%)

Query: 1   MRFRGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGREL 60
           M    +DLNL +  DA+ TE  LT A + V ++QPA+S A+ARLR  F D LF    + +
Sbjct: 1   MNLNKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALARLRETFNDPLFVRTAQGM 60

Query: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLA 120
           +PTP A+ +   VR+AL  +++SV      NP Q+++ +RI ++D    V    + +RL 
Sbjct: 61  VPTPMAQNIIGPVRNALSLLRVSVQESRIFNPLQANKNYRISMTDLTEAVILPALFQRLR 120

Query: 121 REAPGVSFE-LLPLDDDPYELLRRGDVDFLVLPDLFMSSAHPKAKLFAEALVCVGCPTNE 179
           R AP V+ E  L    +  + L  G +DF V   L         KL  +  VC G     
Sbjct: 121 RLAPAVTIESFLSKRRETTKELAAGRLDFAVDAPLNTDPQVRHVKLMEDRYVC-GMRKGH 179

Query: 180 QLLGE--LSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVPGFTLIPPLLP 237
            L  +  L+ + Y+S  H+     R          L + G +RR+ L    + +   +L 
Sbjct: 180 PLANKATLTLDDYLSQSHIHIS-SRRSGLGHVDLALGKMGIQRRIALRSQHYMMATQVLQ 238

Query: 238 HTNRIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEA-VQWPALHNKDPGNIWMREILLQ 296
            T+ +  +P R    F +   L  V  P+  +   E  + W    ++DP N WMRE +++
Sbjct: 239 QTDMVMTVPER----FARRNDLHYVYLPVSDVPSVETHLYWHESTDQDPANRWMREQIIE 294

Query: 297 EASR 300
            + R
Sbjct: 295 LSQR 298