Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 302 a.a., putative transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  122 bits (306), Expect = 1e-32
 Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 22/311 (7%)

Query: 1   MRFRGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGREL 60
           M+   LDLNLL+A DALMT+  +T AA  + +SQPAMS A+ RLRT FGD+L     + +
Sbjct: 1   MKLHQLDLNLLLAFDALMTQGSVTRAAESLFISQPAMSHALGRLRTAFGDQLLVRTPQGM 60

Query: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLA 120
           +PTPRA+ L   VR AL  ++  +   +   P  S RRF +  +D++  V    +V+RL 
Sbjct: 61  VPTPRAQHLHSGVRQALRLLEQQLSEEEAFEPENSRRRFVLCTTDYVECVLMPPLVQRLN 120

Query: 121 REAPGVSFELLPLDDD-PYELLRRGDVDFLVLPDLFMS----------SAHPKAKLFAEA 169
             APGVS E+  L D  P   L  G++D ++  D +M              P A L  + 
Sbjct: 121 ELAPGVSIEIRILRDRLPEAELASGEIDLVLGFDEYMQVPAYLGKETWLTEPLAGLVRKD 180

Query: 170 LVCVGCPTNEQLLGELSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVPGF 229
           L  VG          ++  + + M HV        +   + W L   G  RR+ +    +
Sbjct: 181 LPGVG--------ERMALSELIGMAHVFHSPLGTSEARLDNW-LESQGLSRRISVNSQSY 231

Query: 230 TLIPPLLPHTNRIAIIPLRLVKYFEQTIPLRIVKHPLP-PLWFTEAVQWPALHNKDPGNI 288
                ++  ++ + ++P ++     +  PL+ ++ P   P +    V  PAL    P  I
Sbjct: 232 MSAAAIVCRSDYVLVLPKKVADLLAEHWPLKRLQLPEDVPGYHLNCVWHPAL-GGHPALI 290

Query: 289 WMREILLQEAS 299
           W+R ++ +  S
Sbjct: 291 WLRSLMKELVS 301