Pairwise Alignments

Query, 601 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 603 a.a., spermidine/putrescine ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  128 bits (321), Expect = 8e-34
 Identities = 145/592 (24%), Positives = 243/592 (41%), Gaps = 60/592 (10%)

Query: 45  VLVLLTAL-VAAPLLKVFGATLAPGAWSAWSDVLASNLSRNLFWLP-----LANTMILGA 98
           ++VLL AL +  PLL +F  +     + A    L  +  R +F  P       N + L  
Sbjct: 27  LVVLLAALAIFVPLLLIFYQSFLSAPFFAPVKELTFDSYRFIFDDPDFRQAFVNGLTLAT 86

Query: 99  GVATGCVLVGGFLAWLVVMTDVPFRRTIGLLATLPFMIPSFATALAWGSLFRNARVGGQI 158
           G+A   V +GG LA+L+V TD+P R  I        M+P F + +  G  F      G +
Sbjct: 87  GLALIAVPLGGMLAFLMVRTDLPGRSFIAPA----LMVPIFVSPMVIG--FGYVVSMGPV 140

Query: 159 GF--------LEGLGFSVPDWLAWGMVPTLVVLMAHYYSLAFTVIAAALATVNSDLVEAA 210
           GF        L   GF    W  +     +++    +    +   +AAL ++ SD+ EAA
Sbjct: 141 GFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPHVYLYASAALRSLGSDVEEAA 200

Query: 211 QMTGAGRRRIFLGIVLPVALPALVAGASLTFAGAVSNFAAPALLGLPVRMQTLATRLYGM 270
           ++ GA   ++ L + LP+ +PAL     L F      F    +LG P     L T LY +
Sbjct: 201 RVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGFEVFGLVLVLGDPEGHLVLPTYLYKL 260

Query: 271 I-EIGQAERGYV--LAILLILVSAFFLWAGNRVISGRRSYATITGKGGRSKRFALGTARL 327
             ++G      +  +A+ L+ V+   +     ++     Y  I GKG R K   LG  R 
Sbjct: 261 TNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKYVAIKGKGARQKALPLGKWRW 320

Query: 328 PLFVAAASICVLTTVVPVVILIASSLAPSSSALFSDWSLHYWIGAS--DPAIARGQAGIW 385
             FV  A   + T ++P+           S      +  H+  G S  +         +W
Sbjct: 321 VAFVLIAGWLLFTVIIPL-----------SGIGLRTFVSHWGDGVSLLEVLTFENLLNVW 369

Query: 386 NNPLILSATGVTVGLGVTVAFSASLVGLLVAFVLARSRSGFLSAAINQISFLPLLVPGIA 445
           + P ++     TV +GV     A      +A  + R + G ++  ++    +P  VPG+ 
Sbjct: 370 DQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDG-VTRFLDYSVLVPRAVPGLL 428

Query: 446 FGAAYV------------ALLGA--PIGP------LPALYG---TFLLLVIAATAYLVPF 482
            G +++            AL G   PI        +PAL G   T   + +A +   + +
Sbjct: 429 AGLSFLWVFLFVPSLLDSALKGIDNPIALWLVDSFIPALRGLRSTIFSVWLAYSVVWMAY 488

Query: 483 AVQTGRAVIQQVSGDLDESARMTGAGFLRRLFAITVPLAIRGLSAGALIVFVKIVRDLSL 542
            ++     + QV  +L+E+AR  GA   R    +T+PL   GL    L+VF+   R+ S 
Sbjct: 489 GLRLINTALLQVGPELEEAARAVGASRSRVTRDVTLPLVRYGLVGAWLMVFLIFEREYST 548

Query: 543 VVLLFTPTMPLLSVLAYRYASDGFTQFANALTVVVLVISVAATLFANRLQAK 594
            V L +P   ++  +     + G  +   AL+ + + +       A R   K
Sbjct: 549 GVYLLSPGTEVIGSMIVSMWAAGAVELVAALSFINITLVAVGLGIALRFGVK 600