Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  186 bits (472), Expect = 7e-52
 Identities = 100/312 (32%), Positives = 177/312 (56%), Gaps = 7/312 (2%)

Query: 23  LVVFITRRFAVTIPLLLIISFGVFALIHIAPGDPVSSLLGARASDPATLAAIRARYHLDD 82
           ++ FI +R    IP +L++    F L+  APG+P SS    R   P  +A I A+Y LD 
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS---ERPLPPEVMANINAKYGLDK 57

Query: 83  SLLVQYGTWLSQVIRGDLGVSI-LGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGA 141
            +  QY T+L+ +++GD G S    + +V   IA  L V++ + L +    + +G+ +G 
Sbjct: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117

Query: 142 LAAFRRGTGLDRTVVMFSVFGISSPAFVTGIFFLYVFGVLLHWFPTFGAGTGFLDRAWHL 201
           +AA ++ T +D T++  ++ G+  P+FV     +Y+F +    FP  G   G  +   ++
Sbjct: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFE---YM 174

Query: 202 ALPALALAASTMAIVVKITRAAVIEELARDYVTFARARGVSSRRILLAYVLRNSLIPVIT 261
           ALP L ++   +A   +ITR ++IE L  +++  ARA+G+S   I++ + L+ +L+PV++
Sbjct: 175 ALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVS 234

Query: 262 AAGLIVIGILAGAIYVEVTFSLPGLGALMIDAVQKRDIPTIQGITLLFSAFVVLVNLAVD 321
             G   +GI+ G++ +E  F LPG+G L ++A   RD   + G+T+L     +L N  VD
Sbjct: 235 YMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVD 294

Query: 322 VIYTLIDPRIRF 333
           ++   IDP+IR+
Sbjct: 295 ILLAYIDPKIRY 306