Pairwise Alignments

Query, 276 a.a., TRm1b transposase from Sinorhizobium meliloti 1021

Subject, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 26/250 (10%)

Query: 27  RGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRVMKLHNL 86
           + R  L +RE+V+ ++     +  Y  R++   LR  A +        +R +      NL
Sbjct: 36  QSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNL 95

Query: 87  LLVRHTGAVDDRLHEGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVA 146
           L +       +++  G V   ++   W              + +A  +D   R  +    
Sbjct: 96  LNMNFNPVSANQVWAGDVTYLKTGEGW--------------MYLAVVMDLYSRRIVGW-- 139

Query: 147 TTEGIKSQDVQDLVITAVENRFGRINMLSEPIEWL---TDNGSCFVARDTASLLRDIGME 203
               I  +   DL+  A+   +     L +P   L   +D GS + ++    LL   G+ 
Sbjct: 140 ---RIDKRMTTDLISKALIKAYN----LRQPARGLVFHSDRGSQYTSKQFGRLLSSYGIR 192

Query: 204 PCTTPVRSPQSNGMAEAFVKTFKRDYVSVNPTPDAETVMAQLPFWFEHYNNLHPHSALGY 263
                V +   N + E F  + K D++     P  E +   +  + ++YN    HSA   
Sbjct: 193 ASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIKYYNLERLHSANND 252

Query: 264 QSPREFISSQ 273
            SP EF +SQ
Sbjct: 253 LSPVEFENSQ 262