Pairwise Alignments

Query, 276 a.a., TRm1b transposase from Sinorhizobium meliloti 1021

Subject, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 65.5 bits (158), Expect = 1e-15
 Identities = 62/271 (22%), Positives = 112/271 (41%), Gaps = 15/271 (5%)

Query: 1   MKTVCETLGVARSNIAARAAGSPSRARGRPP-LPDRELVEDIKAVIADMPTYGYRRVHAI 59
           M    +T G  +    A A   P   R R   L D EL   +K + ++   +GYRR+H +
Sbjct: 1   MDWAMKTKGYNQRRACALAGIDPRVYRRRSKRLADTELRVRMKELASERRRFGYRRLHML 60

Query: 60  LRRNARKLGRSWPNAKRVYRVMKLHNLLLVRHTGAVDDRLHEGQVAVERS-NIRWCSDGF 118
           L+R   ++     N K++YR+ +   L + +  G          +A+ +  N RW  D  
Sbjct: 61  LKREGWEV-----NWKKLYRLYRDEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFM 115

Query: 119 EIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLVITAVENRFGRINMLSEPI 178
               ++  + RV   +D   RE +A V  T    ++  ++L   A         +   P 
Sbjct: 116 SDALEDGRRFRVLNVIDDFSRECLAAVVDTSISGARVARELDRIA--------ELRGYPC 167

Query: 179 EWLTDNGSCFVARDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVSVNPTPDA 238
             ++DNG+   +        D  ++        P  NG+ E+F    + + ++ +  P  
Sbjct: 168 LVVSDNGTELTSNAMLKWQEDRKVDWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSL 227

Query: 239 ETVMAQLPFWFEHYNNLHPHSALGYQSPREF 269
                 +  W + YN+  PHS+L   +PRE+
Sbjct: 228 RHACRMIAAWRDDYNHHRPHSSLDGLTPREY 258