Pairwise Alignments

Query, 346 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 270 a.a., DNA ligase (RefSeq) from Shewanella loihica PV-4

 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 83/315 (26%), Positives = 135/315 (42%), Gaps = 57/315 (18%)

Query: 20  ARPRDPAQPNLPFDPMAERIEPCLALLKPVPPKGPDWVFEVKWDGYRLAIHIEPKGVRII 79
           + P +PAQ  LP   +A  +E      +P+     +++   K+DG R        G R++
Sbjct: 7   SEPLEPAQ-RLPGIQLAGSLEAD----RPIS----EYLVSEKFDGVRGRW----TGERML 53

Query: 80  TRGGHDWTHRFPAIAEATSKLGVGTAILDGEAVVLDEEGRSDFGALQRSLGGRGGKRSST 139
           TR G     R PA        G  T  LDGE  +     R  F A+   +  +       
Sbjct: 54  TRSGQ--VIRLPAWFTK----GFPTEPLDGELWI----ARQQFEAISALVRDKDADPERW 103

Query: 140 ESV-FFAFDLLYFDGHDLSGTELSVRRHL-LEGFLDG-PTGAIQSSEEVFGDGALLEKAC 196
            +V F  FD    D        L+V+R+  L  FL   P   IQ S+ +    A L++  
Sbjct: 104 RAVQFMVFDYPTIDSPFAERYALAVKRYANLSPFLQIIPQWRIQDSQAL---NAALDEWV 160

Query: 197 SMGLKGIIAKHRDWPYRSGRTGDWLKIKCLQ-SESFMIVGYEQSLTARGGLGSLLLAGRK 255
           + G +G++  H+   Y +GR GD +K+K  Q +E+ +I  +E     RG +G+L +   +
Sbjct: 161 AQGAEGLMLHHQAAHYHAGRNGDLVKLKRYQDAEAKVIAYFEGKGKYRGMMGALEVETNE 220

Query: 256 GHDWIYVGSVGTGFNTKDAEYLRKTLDRLKTSKPAVPLKGKNLVFAQPTLIAEIEFRGWT 315
           G  +     +GTGF+           D  +   PA+   G  + +         ++ G T
Sbjct: 221 GIRF----KLGTGFS-----------DEQRRHPPAI---GSTVTY---------KYYGLT 253

Query: 316 HDGSLRHASYKGLRE 330
           H+G  R AS+  +RE
Sbjct: 254 HNGVPRFASFMRVRE 268