Pairwise Alignments

Query, 556 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 655 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Pseudomonas fluorescens FW300-N2E2

 Score =  162 bits (409), Expect = 5e-44
 Identities = 105/312 (33%), Positives = 160/312 (51%), Gaps = 17/312 (5%)

Query: 205 MANADVEADAVWDSKHGLAAEERKKGSRRDVATSTAADLPDFIEPQLCETLARPPASDDW 264
           MANA+ E+  + ++K   A   RK    R         LP+ + PQL   +  PP  + W
Sbjct: 1   MANAESESARLSNAKSE-ATTARKAPQNR---------LPERLSPQLATPVEEPPTGE-W 49

Query: 265 LHEIKFDGYRIQMRIADGKVTLKTRKGLDWTAKYPEIADAAS--ELPDCIIDGEICALDD 322
            +E++F GYR+  RI  G+V L  R   DWT +    ADA +   L D  +DGE+  LD+
Sbjct: 50  RYEVQFHGYRLLARIEQGEVRLFNRNHQDWTERLKLHADALAGWNLGDSWLDGELVLLDE 109

Query: 323 NGAPDFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRSMRLVERKKRLEDFLAAGSDDPR 382
            G  DFAAL+ A    +T +++YF FD  F  G DLR   + ER+  L+  L   +   R
Sbjct: 110 TGRSDFAALRQAFDISRTVDMLYFLFDAPFLNGVDLRQAPVEERRAALKKAL-GNNASKR 168

Query: 383 IRYVDHFESGGDAVLRSACKLSLEGIVSKQMDAPYQSGRTDTWAKSKCRAGHEVVIGGYA 442
           +R+ + F +    +  SA  L+L+ +V K++ +PY+S R+  W K KCR     VI G+ 
Sbjct: 169 LRFSESFSASPHDMFESAIALALDSVVGKRVGSPYRSQRSADWVKLKCRLRQAFVIVGFT 228

Query: 443 TTNGK---FRSLLVGVHRGDHFVYVGRVGTGFGAAKVERFFPKLKALEASKSPFTGIGAP 499
              G+   F +LL+ V+     VY GRVGTGF   ++++   +L A +   SP       
Sbjct: 229 RPQGRRSGFGALLLAVNGPSGLVYAGRVGTGFSQTQIQQLHAQLCAQQRETSPLALPLNG 288

Query: 500 KKEKEVTWLPDG 511
            + + V W+  G
Sbjct: 289 VQGRGVQWVEPG 300