Pairwise Alignments

Query, 556 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

 Score =  369 bits (946), Expect = e-106
 Identities = 223/551 (40%), Positives = 309/551 (56%), Gaps = 30/551 (5%)

Query: 12  RDFKKTREPSGEAQVKPSNRR--RFVIQKHDATRLHYDLRLELDGVFKSWAVTKGPSLDP 69
           RDF  T EP+G+A+ K    +  ++ IQKHDATRLHYD RLELDG  KSWA+ KGPSLDP
Sbjct: 10  RDFAATPEPAGKARPKSRKTQALQYCIQKHDATRLHYDFRLELDGTLKSWAIPKGPSLDP 69

Query: 70  SDKRLAVEVEDHPLDYGDFEGTVPKGQYGGGTVMLWDRGYWEPEGRKSPEEALKKGDFKF 129
           S +RLAV VEDHPL+Y  FEG++P G YG G V++WDRG W PEG   P +A +KG  KF
Sbjct: 70  SVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPEG--DPRDAYRKGKLKF 127

Query: 130 TLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYSVDENGAAILEENATSVASGRSM 189
            L G++L GS+ LVR + D   GK+  W LIK RD+ + DE+   I+     SV S R++
Sbjct: 128 ALEGEKLAGSWNLVRTQMD---GKKEQWFLIKSRDEAARDESDYDIVAAEPDSVLSDRTL 184

Query: 190 EQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDVATSTAADLPDFIEP 249
             +    G K R      + V+A A            RK+  +  +  +  A LP+  +P
Sbjct: 185 --VPRKRGAKARVAESPPSPVKAPA-------KQRAPRKQKEKVALDGALPAKLPESFKP 235

Query: 250 QLCETLARPPASDDWLHEIKFDGYRIQMRIADGKVTLKTRKGLDWTAKYPEIADAAS--E 307
           QL   +   PA  DW +EIKFDGYR+  RI  G+V L TR G DWTAK P+ A A +   
Sbjct: 236 QLATLVDSVPAG-DWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLG 294

Query: 308 LPDCIIDGEICALDDNGAPDFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRSMRLVERK 367
           L    +DGE+   ++ G PDF ALQ A   G++GN++Y+ FD+ +  G DLR + L +R+
Sbjct: 295 LESGWLDGEVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDIPYLNGMDLRDVPLEQRR 354

Query: 368 KRLEDFLAAGSDDPRIRYVDHFESGGDAVLRSACKLSLEGIVSKQMDAPYQSGRTDTWAK 427
             L + L   SD   +R+ + F    D++L SAC++ LEG++ K+  + Y S R+ +W K
Sbjct: 355 AALREVLER-SDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSKRSSSWVK 413

Query: 428 SKCRAGHEVVIGGYATTNGK---FRSLLVGVH-RGDHFVYVGRVGTGFGAAKVERFFPKL 483
            KC    E +I GY    G    F +LL+G+H      +Y G+VGTGF  A ++    +L
Sbjct: 414 IKCSNRQEFIIVGYTQPKGTRTGFGALLLGLHDEKGKLLYAGKVGTGFNQATLQGLHKQL 473

Query: 484 KALEASKSPFTGIGAPKKEKEVTWL-PDGRALPACRVRSSTDVVRFR-----RSGRSPRA 537
           K LE  KSP          +   WL P+     A    +   VVR       RS +   A
Sbjct: 474 KKLETDKSPLDKAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPAEA 533

Query: 538 LRSDRSEGRAS 548
           +  +R++  AS
Sbjct: 534 ITHERAKPVAS 544