Pairwise Alignments

Query, 400 a.a., TRm3 transposase from Sinorhizobium meliloti 1021

Subject, 405 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  324 bits (830), Expect = 3e-93
 Identities = 153/392 (39%), Positives = 253/392 (64%), Gaps = 9/392 (2%)

Query: 8   LDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDDHLD-VERLEGGPANRRNGSSKK 66
           L QL +G     + GKDG    L K   E  L+ E+  HLD  ERL+G   N+RNG   K
Sbjct: 16  LSQLRSGES---LTGKDGAFGPLLKEFLEAALDGEMSSHLDDSERLKG---NKRNGRGSK 69

Query: 67  TVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPD-FDDKIISMYARGMTVREIQGHLEE 125
            V T   ++ +  P+DR  +F P+++ + +    D    KIIS+Y  G+++R+I  H+EE
Sbjct: 70  RVKTMAGEIDIVTPQDRHSSFSPEILKKRETILADNMSSKIISLYGMGLSLRDISSHIEE 129

Query: 126 LYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYVA 185
           +Y +++S + +S + + ++  V EWQ+RPLE  Y +V+ DA+  K++D G   ++AVY  
Sbjct: 130 MYDVEISHNTLSEIIERIVPKVKEWQSRPLESMYTIVWLDAMHYKVKDGGRTESRAVYNV 189

Query: 186 LAVLADGSKEILGLWIEQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAVFP 245
           LAV  DG KE++G+++ ++EGA FWL V+ +LK RG +D+LIA +D L GF EAI+ +FP
Sbjct: 190 LAVNKDGHKELIGMYVSESEGANFWLSVLTDLKARGMKDVLIACIDNLTGFAEAISTIFP 249

Query: 246 QTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEAGLKALEAFEEGYWGQKYP 305
           + I+Q C++H IR+SL++++ KD++  +  L+ +Y+A + +     L+  ++  WG+KYP
Sbjct: 250 EVIIQNCVIHQIRNSLKYIASKDQKEFMADLKTVYQAPNKDLAELNLDKLQD-KWGKKYP 308

Query: 306 AIAQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLL 365
            + +SWRRNW+++  +FA+ E +RR+IYTTNA+E  + ++R+  +++G FP D A MKL+
Sbjct: 309 VVLESWRRNWDNLSAYFAYDEHIRRLIYTTNAVEGFHRQVRKVTKTKGVFPNDMALMKLI 368

Query: 366 YLVLNNAAEQWKRAPREWVEAKTQFAVIFGER 397
           YL + N +++W +  + W     Q  + FGER
Sbjct: 369 YLAVMNISKKWTQPLQNWALTAGQLRIKFGER 400