Pairwise Alignments

Query, 508 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 547 a.a., ABC peptide transporter, periplasmic ligand binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  228 bits (581), Expect = 4e-64
 Identities = 166/510 (32%), Positives = 249/510 (48%), Gaps = 29/510 (5%)

Query: 2   KRHLLKGTALAVTMAACS---FGATVAFAQE-----------GCVRVLGYESDGEKQTMD 47
           +RH L+   LA   AA +   FGA      +           G +R  G  S     T+D
Sbjct: 31  RRHALQMLGLAGVAAAGAGSLFGAAGKLLADEQASPGKGKPGGRIRGAGISSS-TADTLD 89

Query: 48  PAALIGTDSVYHIR--AVYEPLVDRSNTMQPVPALAESWESNADATEWTFHLRKGVKFHD 105
           PA   G+ S  ++R    Y  L    + M P   LAE  ++  DAT W   LRK V FH+
Sbjct: 90  PAK--GSSSTDYVRHYMFYNGLTRFDSHMVPQLELAERMDTT-DATLWVITLRKEVTFHN 146

Query: 106 GSDFDAKDVVYSYRRLLDPAVSPGGFSTLAFLDADGITAIDDHTVRFKVKEPVVELPMLI 165
           G    A DVV+S  R  DP ++      LA   A+ + A   H V+ ++  P  ELP ++
Sbjct: 147 GKGLTAADVVFSLMRHKDP-ITGSKVLPLAEQFAE-VKATGTHEVQIRLSGPNAELPSIL 204

Query: 166 ATKYALMVPEGAKSEDLRVKGNGTGPFMQETFTINGAVRVMRRNPTYWRAGLPKSECLEI 225
           A  + L+VPEG    +   +G GTGPF  + F   G   +  RN  YW+ GLP  + +E 
Sbjct: 205 AISHLLIVPEGTSDFN---QGIGTGPFKVKEFK-PGVRSIGARNTNYWKPGLPYLDEIEF 260

Query: 226 TTSLEPTSRLSALLSGTVDLSLTVDPASLITLKDNPAVELAATPGATSLYIAVWTDTPPF 285
               +  SR++ALLSG V +   V+P S   +KD+    +  +P      + +  D  P 
Sbjct: 261 IGIGDEPSRVNALLSGDVQIINEVNPRSTTRIKDSTTHRVVDSPSGNYTDLIIRQDQMPG 320

Query: 286 DSVKVREAMKLVMDRQKILDTVLLGYGEVGADTPIPPSSPF-GLGTPAKTADIEKATALL 344
            S +  EAMKL++DR+++   +  G+  VG D PI P + F     P +T D EKA  LL
Sbjct: 321 QSPEFTEAMKLLLDREQVKSAIFRGFARVGNDHPIAPGARFYNADLPQRTYDPEKARFLL 380

Query: 345 AEAGHPDGIDFDLYTSDSYPGMMLLAQVYAQMAAPAGIRVNVITSPAEGYWDTIWLKKPA 404
            +AG  + I   +  S +  G + +A +  Q A  AG+++NV   P++GYW   W K P 
Sbjct: 381 KKAG-MESISMPVMCSPAATGSVDVAVLLQQSAKEAGLKLNVNRLPSDGYWSNHWAKHPL 439

Query: 405 VISYTSARPPAEAL-TLSLNSKSEWNETHWTRDDFDALVVKAGQTADEKQRNDLYRDAQR 463
                + RP A+ + +    S + WNE+ W    FD L+++A    DE +R  +Y D Q 
Sbjct: 440 SFGNINPRPNADMIFSQFFQSTAPWNESGWKNPQFDQLLIQARGETDEVKRGKMYGDMQA 499

Query: 464 IVADEGGMILPVFSSVVAGLRKGCSGYEPN 493
           +V +  G+ +PVF S + G+ +   GY  N
Sbjct: 500 LVHEHSGIGIPVFISNIDGVDQRVKGYGTN 529