Pairwise Alignments

Query, 604 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  236 bits (603), Expect = 1e-66
 Identities = 173/449 (38%), Positives = 239/449 (53%), Gaps = 85/449 (18%)

Query: 3   NLIEVRNLNIAYGGPSGWTNVVQDVSFEIAPGEAFGLVGESGCGKSTVAYRLLGYGTINS 62
           NLIE+R+L++A+   +    VV+++  +I PGE   LVGESG GKS  A+ +L     N 
Sbjct: 10  NLIEIRDLSVAFNDQT----VVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENE 65

Query: 63  LVQTGEVLFDGTDLLKLDAASLMRLRGNRIAFVPQNPTTSLSPGMRVGSQICEMIATHKA 122
              +G + + G +L+  D  +L  LRGNRIA + Q P TSL+P   V  QI E +  HK 
Sbjct: 66  AHTSGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHKG 125

Query: 123 LPDGMTMERRIVELFTLVGLPDVGHR---YPHELSGGQQQRVTIAMAVACNPDLLVLDEP 179
           L  G    +RI+EL TLVG+ +   R   YPH+LSGGQ+QRV IAMA+AC P+LL+ DEP
Sbjct: 126 L-GGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEP 184

Query: 180 TTGLDVTTQRQIIQLLADLRSRIGMAMLYVTHDLALLAQIADRVGVMYAGQLVEVAPCDK 239
           TT LDVT QR+I+ LL  L+ R+GM++L ++HDL L+  IA RV VM AG++VE APC+ 
Sbjct: 185 TTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCET 244

Query: 240 LLSAPAHPYSRGLIASIPTNDGTDRQARSLRGMLRRDEMSTGCKFEPRCDFATGACRATP 299
           L SAP HPYS  L+ + P  +   R  R                                
Sbjct: 245 LFSAPKHPYSCELLHAEPEGEALPRDDRE------------------------------- 273

Query: 300 QLLELIEDARSVACMRWREATAPLAPSVTAKAVARTAVRSESLLSVTELSLSYQQPGLFN 359
           ++L+ ++D R          + PL+  +          R E L +V  +SLS Q+     
Sbjct: 274 EVLQ-VQDLR---------VSFPLSGGLFR--------RKEYLRAVDGISLSIQR----- 310

Query: 360 RLLGRTSPAVVREINLNLAAGEVVALVGGSGSGKSTIARAISARLPPRAGIIRLDGTALA 419
              G+T   V          GE      GSG  KST+ +AI  RL    G IR  G AL 
Sbjct: 311 ---GKTLGIV----------GE-----SGSG--KSTLGQAI-LRLIESEGSIRFQGQAL- 348

Query: 420 PSLKDRSVEELR-QIQYIFQNPDASLNPR 447
             L  +++   R Q+Q +FQ+P  SL+PR
Sbjct: 349 DHLSQKALRPWRKQMQVVFQDPFGSLSPR 377



 Score =  148 bits (374), Expect = 5e-40
 Identities = 91/262 (34%), Positives = 146/262 (55%), Gaps = 16/262 (6%)

Query: 2   KNLIEVRNLNIAYGGPSG------WTNVVQDVSFEIAPGEAFGLVGESGCGKSTVAYRLL 55
           + +++V++L +++    G      +   V  +S  I  G+  G+VGESG GKST     L
Sbjct: 273 EEVLQVQDLRVSFPLSGGLFRRKEYLRAVDGISLSIQRGKTLGIVGESGSGKST-----L 327

Query: 56  GYGTINSLVQTGEVLFDGTDLLKLDAASLMRLRGNRIAFVPQNPTTSLSPGMRVGSQICE 115
           G   +  +   G + F G  L  L   +L   R  ++  V Q+P  SLSP M V   I E
Sbjct: 328 GQAILRLIESEGSIRFQGQALDHLSQKALRPWR-KQMQVVFQDPFGSLSPRMSVQQIISE 386

Query: 116 MIATHK-ALPDGMTMERRIVELFTLVGL-PDVGHRYPHELSGGQQQRVTIAMAVACNPDL 173
            +  H+ + P+    E R+++    VGL P   HRYPHE SGGQ+QR+ IA A+   P L
Sbjct: 387 GLEVHQPSSPE--QCEARVIQALKEVGLDPATRHRYPHEFSGGQRQRIAIARALVLKPAL 444

Query: 174 LVLDEPTTGLDVTTQRQIIQLLADLRSRIGMAMLYVTHDLALLAQIADRVGVMYAGQLVE 233
           ++LDEPT+ LD T Q+Q++ LL  L+ +  +  L+++HDLA++  +A  + V+  G++VE
Sbjct: 445 ILLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKVVE 504

Query: 234 VAPCDKLLSAPAHPYSRGLIAS 255
                 +  +P HPY++ L+A+
Sbjct: 505 QGASHDVFDSPQHPYTKELLAA 526



 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 19/119 (15%)

Query: 334 RTAVRSESLLSVTELSLSYQQPGLFNRLLGRTSPAVVREINLNLAAGEVVALVGGSGSGK 393
           R    S++L+ + +LS+++                VVR + L++  GE +ALVG SGSGK
Sbjct: 3   RNLEMSDNLIEIRDLSVAFNDQ------------TVVRNLCLDIRPGECLALVGESGSGK 50

Query: 394 STIARAISARLPPR----AGIIRLDGTALAPSLKDRSVEELR--QIQYIFQNPDASLNP 446
           S  A +I   LP      +G IR  G  L      +++ ELR  +I  IFQ P  SLNP
Sbjct: 51  SVTAHSILQLLPENEAHTSGSIRYRGQELV-GADTQALRELRGNRIAMIFQEPMTSLNP 108