Pairwise Alignments

Query, 604 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  210 bits (534), Expect = 1e-58
 Identities = 110/258 (42%), Positives = 166/258 (64%), Gaps = 5/258 (1%)

Query: 4   LIEVRNLNIAYGGPSGWTNVVQDVSFEIAPGEAFGLVGESGCGKSTVAYRLLGYGTINSL 63
           L++VRNL++++    G  + V++VSF+I PGE   +VGESG GKS     L+     N+ 
Sbjct: 6   LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNAR 65

Query: 64  VQT-GEVLFDGTDLLKLDAASLMRLRGNRIAFVPQNPTTSLSPGMRVGSQICEMIATHKA 122
           +     ++F+G +LL      + R+RG+RI  + Q P TSL+P MRVG Q+ E I  H+ 
Sbjct: 66  IHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRN 125

Query: 123 LPDGMTMERRIVELFTLVGLPD---VGHRYPHELSGGQQQRVTIAMAVACNPDLLVLDEP 179
           +      ++R++ELF LV LPD      ++PHE SGGQ QR+ IAMA+   PD+L+ DEP
Sbjct: 126 VSQNQA-KQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEP 184

Query: 180 TTGLDVTTQRQIIQLLADLRSRIGMAMLYVTHDLALLAQIADRVGVMYAGQLVEVAPCDK 239
           TT LDVT Q ++++L+ ++++ +GMA+L++THDL ++  +ADRV VM  G +VE    ++
Sbjct: 185 TTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQ 244

Query: 240 LLSAPAHPYSRGLIASIP 257
           L   P H Y+R LI SIP
Sbjct: 245 LFLQPEHDYTRMLINSIP 262



 Score =  154 bits (388), Expect = 1e-41
 Identities = 91/235 (38%), Positives = 137/235 (58%), Gaps = 11/235 (4%)

Query: 24  VQDVSFEIAPGEAFGLVGESGCGKSTVAYRLLGYGTINSLVQTGEVLFDGTDLLKLDAAS 83
           V+ +S E+  GE  G+VGESG GKST+   L+G      L  TG++ F G D   L    
Sbjct: 303 VKGISLELKQGETLGIVGESGSGKSTLGRALIGL-----LPSTGQIAFKGQDFRALSEKQ 357

Query: 84  LMRLRGNRIAFVPQNPTTSLSPGMRVGSQICEMIATHK---ALPDGMTMERRIVELFTLV 140
            + L+ + I  V Q+P  SLSP M VG  I E +  H+   +  + M   RR +E   L 
Sbjct: 358 RLALKKD-IQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLD 416

Query: 141 GLPDVGHRYPHELSGGQQQRVTIAMAVACNPDLLVLDEPTTGLDVTTQRQIIQLLADLRS 200
             P+  +RYPHE SGGQ+QR+ IA A+   P  ++LDEPT+ LD + Q  +I+LL +++ 
Sbjct: 417 --PNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQK 474

Query: 201 RIGMAMLYVTHDLALLAQIADRVGVMYAGQLVEVAPCDKLLSAPAHPYSRGLIAS 255
           R  +  L+++HDLA++  ++DRV VM  GQ++E    + +   P H Y++ LIA+
Sbjct: 475 RRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAA 529



 Score = 52.8 bits (125), Expect = 4e-11
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 370 VREINLNLAAGEVVALVGGSGSGKSTIARAISARLPPRAGIIRLDGTALAPSLKDRSVEE 429
           V+ I+L L  GE + +VG SGSGKST+ RA+   L P  G I   G       + + +  
Sbjct: 303 VKGISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQDFRALSEKQRLAL 361

Query: 430 LRQIQYIFQNPDASLNPR 447
            + IQ +FQ+P  SL+PR
Sbjct: 362 KKDIQMVFQDPYGSLSPR 379



 Score = 45.4 bits (106), Expect = 6e-09
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 370 VREINLNLAAGEVVALVGGSGSGKSTIARAISARLPPRAGI-----IRLDGTALAPSLKD 424
           V+ ++ ++  GE +A+VG SGSGKS    A+   LP  A I     I  +G  L  +  D
Sbjct: 26  VKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNARIHPESSIMFEGEELL-NKTD 84

Query: 425 RSVEELR--QIQYIFQNPDASLNP 446
             +  +R  +I  IFQ P  SLNP
Sbjct: 85  TQMRRIRGDRIGMIFQEPMTSLNP 108