Pairwise Alignments

Query, 331 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  188 bits (477), Expect = 2e-52
 Identities = 125/308 (40%), Positives = 174/308 (56%), Gaps = 26/308 (8%)

Query: 26  IALAVIVLFGALVNPNFVSSANLINVITRSAFIAIIAVGATFVISSGGLDLSVGSMMAFV 85
           IAL  +V+  + +NPNF +  NL+N++ +++  AIIAVG T VI + G+DLSVGS++A  
Sbjct: 36  IALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLA-- 93

Query: 86  TGIMIMAMNHLAPAFGAWAIPMGAGV------ALLVGALCGLFNGLIVTVGRIEPFIVTL 139
                     L  AF A  + M   V      ALL GA  G  +G+I+  G+++ FI TL
Sbjct: 94  ----------LCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATL 143

Query: 140 GTMGIFRAFITFMTDGGSLPIDRSLRE-AYRPVYFGSFF--GIPYPVLITFVVVMAGA-F 195
            TM + R      TDG   PI     + A    +FG+ +  GIP PV +  VVV AGA +
Sbjct: 144 VTMTLLRGVTMVYTDGR--PISTGFTDTADTFAWFGTGYTLGIPVPVWL-MVVVFAGAWY 200

Query: 196 LLYKTKYGRRLKSAGSNVEVARFSGVNVAGVRTGAYVIQGFCVAVAAICYVPRLGAATPT 255
           LL  T++GR + + G N    R SG+NV  V+ G Y I G   A+A I    RL +A PT
Sbjct: 201 LLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPT 260

Query: 256 TGQLWELQVITAVVIGGTLLRGGRGRIGGTVAGALILEVIANVMVLSDLVSEYLVAAVQG 315
            G  +EL  I AVV+GGT L GG+GRI GT+ GALI+  + N + L D VS Y     + 
Sbjct: 261 AGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLD-VSSYYQMIAKA 319

Query: 316 AIIIIAML 323
            +I++A+L
Sbjct: 320 VVILLAVL 327