Pairwise Alignments

Query, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

Subject, 333 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) from Phaeobacter inhibens DSM 17395

 Score =  140 bits (354), Expect = 3e-38
 Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 11/333 (3%)

Query: 1   MRKLLLATTAIAFGLSAA-APAFAEFNDRNIRVSNGINED-HPVGNGIKAMQACLDQKSG 58
           M+ +  A TA+A  +SA  A A  +  +  ++ S+  N D HP G     ++  ++++  
Sbjct: 1   MKFVTAAATAVALTMSAGTAMAACDDGEIVVKFSHVTNTDKHPKGIAASLLEKRINEEMN 60

Query: 59  GKLKLTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFANAQEA 118
           G + L  +    L  D +  +A+  G  +    S S          +FDLPF+F N    
Sbjct: 61  GTMCLEVYPNSTLYNDNKVLEAMLQGDVQLAAPSLSKFEKFTKQFRLFDLPFMFKNIDAV 120

Query: 119 YTVLDGDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNNIF 178
                 + G  M + ++  GL  L+YW NG + +S + +P+    D  G+K RV  +++ 
Sbjct: 121 DAFQGSENGQAMLDSMQRRGLQGLSYWHNGMKQMSAN-KPLINPSDANGLKFRVQSSDVL 179

Query: 179 LDTFQNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEVQKYVTETNHAYTPF 238
           +   + +G +   MAF EV+ AL+   +D QEN +  I   KFFEVQ  VTETNH    +
Sbjct: 180 VAQMEAIGGSPQKMAFSEVYGALQQGVVDGQENTWSNIYGKKFFEVQDGVTETNHGALDY 239

Query: 239 LFLFSKPIFDSYTP--EEQ--AALRECAVVGRDEERKVIQDLNKKSLEKIKEAGLEVNTL 294
           L + S    DS  P   EQ    L E       E  KV    N ++ + I +AG  V  L
Sbjct: 240 LVVTSVDWLDSLDPAVREQFLTILGEVTATRNSESTKV----NAEARQSIIDAGGVVREL 295

Query: 295 SAEEQARIREKSMVVYEKHKAEIGAEVVDAILA 327
           + E++A   E    V+E+   ++G +++DA  A
Sbjct: 296 TPEQRAAWVEAMKPVWEQFAGDVGQDMIDAAQA 328