Pairwise Alignments

Query, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

Subject, 336 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) from Shewanella loihica PV-4

 Score =  125 bits (313), Expect = 2e-33
 Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 10/332 (3%)

Query: 3   KLLLATTAIAFGLSAAAPAFAEFNDRNIRVSNGINEDHPVGNGIKAMQACLDQKSGGKLK 62
           K ++  T+IA  L A+  ++A   +  I+ S+ + E+ P G      +  ++++  G+ +
Sbjct: 11  KQIVKMTSIAALLGASLNSWAAPTE--IKFSHVVAENTPKGQMALKFKQLVEERLPGEYQ 68

Query: 63  LTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFANAQEAYTVL 122
           +  F    L GD     AL     + V  S S        L +FDLPFLF +        
Sbjct: 69  VNVFPNSQLFGDNNELSALLLNDVQFVAPSLSKFERYTKKLQLFDLPFLFKDMDAVNRFQ 128

Query: 123 DGDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNNIFLDTF 182
             D G  +   ++  G+V L Y  NG +  S S  P+   ED +G K R+M +++    F
Sbjct: 129 QSDAGQQLLNSMKRKGVVGLGYLHNGMKQFSAS-SPLVLPEDAQGKKFRIMASDVLAAQF 187

Query: 183 QNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEVQKYVTETNHAYTPFLFLF 242
           Q + A      F EVF+ L+T+AID QEN +  I + KF+EVQ  +TE+NH    ++ + 
Sbjct: 188 QAVEAIPVKKPFSEVFTLLQTRAIDGQENTWSNIYSKKFYEVQSNITESNHGVLDYMVVT 247

Query: 243 SKPIFDSYTPEE----QAALRECAVVGRDEERKVIQDLNKKSLEKIKEAGLEVNTLSAEE 298
           S   + S   ++    +A+L E    G +        +NK     I     EV  L+ E+
Sbjct: 248 SNTFWKSLPADKRKVIKASLDEAIAYGNE---IAAAKVNKDKQAIIDSKRSEVTYLTPEQ 304

Query: 299 QARIREKSMVVYEKHKAEIGAEVVDAILAKLE 330
           +A        V+ + + +IG +++DA +A  E
Sbjct: 305 RAAWVNAMKPVWAQFEDKIGKDLIDAAVASNE 336