Pairwise Alignments

Query, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

Subject, 336 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  142 bits (358), Expect = 1e-38
 Identities = 89/323 (27%), Positives = 166/323 (51%), Gaps = 4/323 (1%)

Query: 7   ATTAIAFGLSAAAPAFAEFNDR-NIRVSNGINEDHPVGNGIKAMQACLDQKSGGKLKLTA 65
           A  AIA     AA ++AE   R  IR+++ +   + V  G +  +  ++ KS GK+++  
Sbjct: 9   AIAAIACIAMLAAGSYAEAAKRITIRLAHPMAPGNNVTLGYEKFKEIVEAKSNGKVRIQL 68

Query: 66  FWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFA--NAQEAYTVLD 123
           F    LG D    +A + G  E   +SS  +      + VFDLP++ +  + ++ Y  LD
Sbjct: 69  FGNCMLGSDRVTMEATQRGTLEMASSSSPNMTNFSKEMMVFDLPYITSPEHQEKLYKALD 128

Query: 124 -GDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNNIFLDTF 182
            G  G+ ++      GL  + Y E G+RN + + +P+   +D + +KVR   + I +   
Sbjct: 129 EGALGERLDAIAAGIGLKPIMYSEYGYRNFATTKKPIKTADDLKNLKVRTTDSPIEVAVA 188

Query: 183 QNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEVQKYVTETNHAYTPFLFLF 242
             LG N TP+++GE ++AL+   +D + N +  ++ +K  EV ++  ++ H Y+  L + 
Sbjct: 189 SALGMNPTPVSWGETYTALQQGTVDGEGNTFGLLNDAKHTEVLRHAMDSAHNYSMHLLMI 248

Query: 243 SKPIFDSYTPEEQAALRECAVVGRDEERKVIQDLNKKSLEKIKEAGLEVNTLSAEEQARI 302
           +K  FD    + Q  L +        +R +  DL KK+ +   E G+ +  L+ EE+A++
Sbjct: 249 NKAYFDKLPADVQQILVDSGKEALAYQRAISNDLEKKAEQAFVERGIVITKLAPEERAKM 308

Query: 303 REKSMVVYEKHKAEIGAEVVDAI 325
           RE +  V++K   +I A++V  +
Sbjct: 309 RELTRPVWDKFSNDIPADLVKLV 331