Pairwise Alignments

Query, 316 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 86.7 bits (213), Expect = 6e-22
 Identities = 78/275 (28%), Positives = 128/275 (46%), Gaps = 13/275 (4%)

Query: 1   MKLTRLRTAALAAGLATLLTSTALAADVKATMIIYLDPSVQFFNPVVKGAQDAAAQFGVD 60
           M++ +L T   AA L+T ++  A A D  A ++  L+    FF  +  GA+  A + G +
Sbjct: 1   MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNP--FFVTMKDGAEAKAKELGYN 58

Query: 61  LDVQYANNDPVRQNDLIESATASGVDGIAVAISSSDAFDESICAAVKAGIIVIGFNNDDL 120
           L V  + NDP ++   +E  T  GV  I +  + SDA   +I  A ++ I V+  +    
Sbjct: 59  LIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR--- 115

Query: 121 DGAKGNCRQAYVGMDELASGYELGNRMIKEFGLKSGDVVFNPREIPEASFAVARGGGIEK 180
            GA      +++  D +  G   G+ +  + G  S   V     I   S A  RG G   
Sbjct: 116 -GASRGEVVSHIASDNVVGGEMAGHFIEAKIG--SDAKVIQLEGIAGTSAARERGEGFMN 172

Query: 181 AMTENGIKVETVR---AGLDPAEAQNIIAQFLIANPNVKALFGTGSVTSTVGAGAIKDAG 237
           A+   G K++ +    A  D  +  N++   L ANP+V+A+F      +     AI+ +G
Sbjct: 173 AV--KGSKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASG 230

Query: 238 VDIPFGGFDLAVEIVNAVESGAMYATMDQQPYLQG 272
             +   GFD   + + AVE G + AT+ QQP + G
Sbjct: 231 KSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIG 265