Pairwise Alignments

Query, 338 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

 Score = 63.2 bits (152), Expect = 9e-15
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 10/202 (4%)

Query: 13  ITCAAMPASAFADTSAKKIALSNNYAGNSWRQAMLTSWEKVTGEAVKAGIVASADAFTTA 72
           IT   + A +     A  +  S   + + WR +     E V  EA + GI      F  A
Sbjct: 7   ITALGLWAVSATCAYATTVGFSQVGSESGWRTSFS---EAVKAEAKQRGIDLK---FADA 60

Query: 73  ENQATEQAAQIQNMILQGYDAIVLNAASPTALNGAVKEACDAGITVVSFDGIVTEP---- 128
           + +   Q   +++ I QG DAI++     T     +KEA  A I VV  D  +       
Sbjct: 61  QQKQENQIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSL 120

Query: 129 CAWRIAVDFKEMGRSQVEYLSNKLPDGGNLLEIRGLAGVFVDDEISAGIHEGVKQFPQFK 188
              RIA DF E GR   ++L +K     ++ E++G  G     + +AG ++ +  +P  K
Sbjct: 121 FLTRIASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAK 180

Query: 189 IAGSVHGDWAQDVAQKAVAGIL 210
           I  S  G++ +   ++ + G L
Sbjct: 181 IVRSQTGEFTRAKGKEVMEGFL 202