Pairwise Alignments

Query, 334 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 333 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) from Phaeobacter inhibens DSM 17395

 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 78/333 (23%), Positives = 131/333 (39%), Gaps = 14/333 (4%)

Query: 8   LTTSAVAAICSLVASTAGA-----QTVLKASHQFPGGKGDIRDEMVQLIAREVAAANVGL 62
           +T +A A   ++ A TA A     + V+K SH     K         L  R     N  +
Sbjct: 4   VTAAATAVALTMSAGTAMAACDDGEIVVKFSHVTNTDKHPKGIAASLLEKRINEEMNGTM 63

Query: 63  EIQVFPGSSLYKPNDQWNAVTRGLLDMTSFPLDYASGRHPEFSATLMPGLVGNFDRAMRL 122
            ++V+P S+LY  N    A+ +G + + +  L        +F    +P +  N D     
Sbjct: 64  CLEVYPNSTLYNDNKVLEAMLQGDVQLAAPSLSKFEKFTKQFRLFDLPFMFKNIDAVDAF 123

Query: 123 NDSEFMGDIKKVIENAGALVIADAWLSGAFASKKNC-ITSPDTIKGQVIRAAGPAFEEML 181
             SE    +   ++  G   ++  W +G      N  + +P    G   R          
Sbjct: 124 QGSENGQAMLDSMQRRGLQGLS-YWHNGMKQMSANKPLINPSDANGLKFRVQSSDVLVAQ 182

Query: 182 VEA-GASISSMPSSEIYTGMQTGVLDAANTSSASFVSYRLFEQAKCLTAPGENALWFMYE 240
           +EA G S   M  SE+Y  +Q GV+D    + ++    + FE    +T     AL ++  
Sbjct: 183 MEAIGGSPQKMAFSEVYGALQQGVVDGQENTWSNIYGKKFFEVQDGVTETNHGALDYL-- 240

Query: 241 PVLVSKRVFDGLTEEQQKAILAAGEKAEVYFNEEVRKGDQVMIDTYKKAGVEVVEMSKED 300
            V+ S    D L    ++  L    +     N E  K +     +   AG  V E++ E 
Sbjct: 241 -VVTSVDWLDSLDPAVREQFLTILGEVTATRNSESTKVNAEARQSIIDAGGVVRELTPEQ 299

Query: 301 YDAWLELAKASSYKNFAANVPGGDKLIEKALAV 333
             AW+E  K   ++ FA +V  G  +I+ A A+
Sbjct: 300 RAAWVEAMK-PVWEQFAGDV--GQDMIDAAQAI 329