Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 29  SRDVADDLVQSACERALASAERFEPGTRFDAWIFRIL----RNLWIDQVRRQKTAGVQDD 84
           S DVAD + Q A  +A  +   F   + F  W++RI     +N  + Q RR   + V  +
Sbjct: 44  SGDVAD-VAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAE 102

Query: 85  ITERHDIAGSSGERETEARLTL-----KTVAEAITELPDEQREVVLLVCVEELSYREAAD 139
             E ++   +  E      +TL     KTV +AI  LPD+ +  + L  ++ LSY E A+
Sbjct: 103 EAEFYEGGDALKELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAE 162

Query: 140 VMGIPIGTVMSRLMRARRSL 159
           VM  P+GTV SR+ RAR ++
Sbjct: 163 VMDCPVGTVRSRIFRAREAV 182