Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

Subject, 167 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 80.5 bits (197), Expect = 1e-20
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 12  LMAFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWID 71
           L+     L RFA  L   R+ A+DL+Q    +AL + +++ P T F  W++ I+RN++I+
Sbjct: 10  LVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMYTIMRNIFIN 69

Query: 72  QVR---RQKTAGVQDDITERHDIAGSSGERETEARLTLKTVAEAITELPDEQREVVLLVC 128
             R   R +T   Q D     ++   +G   TE    LK +   +  LP E R V   + 
Sbjct: 70  NYRKVVRDQTFIDQTDNLYHLNLPQDTGFESTERTYDLKEMHRVVNALPKEYR-VPFAMH 128

Query: 129 VEELSYREAADVMGIPIGTVMSRLMRARRSLAE 161
           V    YRE A+ + +P+GTV SR+   R+ L E
Sbjct: 129 VSGFKYREIAEKLNLPLGTVKSRIFFTRQKLQE 161