Pairwise Alignments

Query, 853 a.a., Sensor histidine kinase from Sinorhizobium meliloti 1021

Subject, 778 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score = 85.9 bits (211), Expect = 8e-21
 Identities = 116/423 (27%), Positives = 172/423 (40%), Gaps = 65/423 (15%)

Query: 286 EERLAATYQAATIGIAESDADGRLLRVNDAFCTML---------GRSREQLLNMTFLDYT 336
           + RL   +     G+A    D RL+R N  F +++         G+   ++L       T
Sbjct: 10  DSRLIDIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVAPDT 69

Query: 337 HEDDR-----DEEARCYARQVSGETDTYAIRKRAVKADGTVIYLDVYSSTVRDRTG---- 387
            E++R     D++ R       G  D  A R      +G ++         RDR G    
Sbjct: 70  GEENRADSGPDDDGR-------GTEDDAAER-----LEGALLGTPTEIRLGRDRWGLVHG 117

Query: 388 -RFRYGVR--VLLDVTEAK-------RMDDRRRESEQHMRDLLEALPAAVYTTDAEGRIT 437
            R + G    VL D+T +K         + R RE+E  +   LE++    Y  DA   + 
Sbjct: 118 HRLKDGALFCVLRDITASKAGAARIAESNRRIREAESRLERALESIDQGFYLCDASDTVV 177

Query: 438 FFN-KAAVEMAGRTPQIGDKWCVTWRLYRPDGTYLP----HDQCPMAVTLKEDRPVRGEQ 492
             N K A  + G  P               D   +P    H    +++ +      RG  
Sbjct: 178 LRNAKLAHLLPGLPPLEPGTTYGAMMAAACDNGAIPAATRHRTRWLSLCMARHHLPRGAW 237

Query: 493 AVAERPDGTRVPFIPYPTPLHDVAGKLVGAVNMLVDISDREKAAEYA----ERLASIVRF 548
              E   G  V      TP         G V +L DI++  KA+E      +RL  I++ 
Sbjct: 238 DF-ENGRGRWVRVSESLTPEG-------GRVGLLTDITETRKASEQVRQREQRLDGIMKT 289

Query: 549 SDDAIVSKDTQGIIQTWNKGAERLFGYSAEEVIGKPINILIPPDRQGEEPGILERIRRDE 608
             D IV  D  GII+++N  AERLFGY AEEV+G  IN LIP    G     L R  +  
Sbjct: 290 VVDGIVVIDENGIIESFNPAAERLFGYRAEEVVGASINRLIPGGESGRHDRSLRRYLQTG 349

Query: 609 HID----HYETVRIRKDGSLIDVSLTVSPLKDARGRVVGASKIARDITERRRSEEHRKLL 664
                    E + +R+DGSL+ V L +S L+    R+   + + RDI+ R+  E  R+L 
Sbjct: 350 QAGIIGRGREELALRRDGSLLPVELAISELRLDDRRIF--TGLVRDISARK--EADRQLR 405

Query: 665 VNE 667
            NE
Sbjct: 406 ENE 408



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 92/407 (22%), Positives = 160/407 (39%), Gaps = 55/407 (13%)

Query: 36  ALDAIPGAVYVCDHEGWLVGYNAEAAELWGRQPSLSAPRERFCGSQRLFLSDGSPMDHQE 95
           AL++I    Y+CD    +V  NA+ A L    P L  P   +         +G+      
Sbjct: 159 ALESIDQGFYLCDASDTVVLRNAKLAHLLPGLPPLE-PGTTYGAMMAAACDNGA------ 211

Query: 96  CPMAEAIKTGVSTRNAEVIIER---PDGSRIFALVNIRPLRDHRGVIQ--GAINCFQDIS 150
            P A    T   TR   + + R   P G+  F     R +R    +    G +    DI+
Sbjct: 212 IPAA----TRHRTRWLSLCMARHHLPRGAWDFENGRGRWVRVSESLTPEGGRVGLLTDIT 267

Query: 151 QQKRIEAEVNCKSKDLEDFFENSAIGLHIVSAAGIILRANKAELELLGYPADEYVGRHIA 210
           + ++   +V  + + L+   +    G+ ++   GII   N A   L GY A+E       
Sbjct: 268 ETRKASEQVRQREQRLDGIMKTVVDGIVVIDENGIIESFNPAAERLFGYRAEE------- 320

Query: 211 EFHADAPVIGDILDRLSCGEKLDRYPARLR--------------------ARDGSIKHV- 249
                  V+G  ++RL  G +  R+   LR                     RDGS+  V 
Sbjct: 321 -------VVGASINRLIPGGESGRHDRSLRRYLQTGQAGIIGRGREELALRRDGSLLPVE 373

Query: 250 LITSNSRFEDGKFVNTRCFTTDITSLHETENAWRETEERLAATYQAATIGIAESDADGRL 309
           L  S  R +D +         DI++  E +   RE EER A         I + D D   
Sbjct: 374 LAISELRLDDRRIFTG--LVRDISARKEADRQLRENEERYALAIAGTHEAIVDWDIDSDT 431

Query: 310 LRVNDAFCTMLGRSREQL-LNMTFLDYTHEDDRDEEARCYARQVSGETDTYAIRKR-AVK 367
           +  +D    ++G   + L  + +++   H D R +        + GE+  ++   R A +
Sbjct: 432 ITYSDRITAIVGLDPKDLDRSASWIALIHPDHRKDYLTRMDALLRGESSFFSCDFRLAGR 491

Query: 368 ADGTVIYLDVYSSTVRDRTGRFRYGVRVLLDVTEAKRMDDRRRESEQ 414
           A     +L   ++ +R   G+       + D+T+++R +DR RE+++
Sbjct: 492 AGAEERWLRHRATALRRPDGQIYRLSGAVGDITDSRRGEDRLREAKE 538