Pairwise Alignments

Query, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  209 bits (533), Expect = 5e-59
 Identities = 107/310 (34%), Positives = 192/310 (61%), Gaps = 6/310 (1%)

Query: 1   MLRFTLRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRRAADPQMIARLNEEFGL 60
           ML+F  +R+ + IPT++V+  + F +    PG   +S      R   P+++A +N ++GL
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS-----ERPLPPEVMANINAKYGL 55

Query: 61  NKPLMERFVTYVTDLAQFDLGTSFRTRQPVI-DLINDRMWASLQLAIAAMIFALVISVPL 119
           +KP+ E+++TY+T++ Q D G SF+ +   + +LI   +  S+++ +AA +F +++ V +
Sbjct: 56  DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115

Query: 120 GFVAALRPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLPSFGYGDGSFRNLI 179
           G +AAL+  + +D   M  A+ G+ MP F L  +++Y+FA+Q +  P+ G+ DG F  + 
Sbjct: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMA 175

Query: 180 LPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGMSEAKVVRWHVARNALVLIVTT 239
           LP + + +  +A  AR TR  +++ LN++FIRTA +KG+S   +V  H  + AL+ +V+ 
Sbjct: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235

Query: 240 VGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDIPVVQGTILVIVLWFLVINTAVDL 299
           +G  F  +I  +VVIE +F  PGIG L V++  +RD  +V G  ++I   F++ N  VD+
Sbjct: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295

Query: 300 IYAAIDPRIK 309
           + A IDP+I+
Sbjct: 296 LLAYIDPKIR 305