Pairwise Alignments

Query, 693 a.a., ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data) from Sinorhizobium meliloti 1021

Subject, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 95.5 bits (236), Expect = 6e-24
 Identities = 121/495 (24%), Positives = 206/495 (41%), Gaps = 84/495 (16%)

Query: 154 PLPNLAKSWDWSEDGRKLTMHLIEGAKWSDGDPFDADDVMFYWEDNVLDSSVSPLNGATP 213
           P+  LA+S+  ++D   +T  + +G KWSDG+ F ADDV++ +           L  A P
Sbjct: 75  PVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFG----------LLKAKP 124

Query: 214 ETFGEG-----TTLKKIDQYTVEWTFKEAFPRQHLFAMAYGTFCPGPSHILK-TKHPKYA 267
           E    G     T+++K+D+Y V +   EA                   H+ K  K P   
Sbjct: 125 ELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVA---EHVWKDVKDP--- 178

Query: 268 GTTYNEYKNGFPAEYMNLPVMGAWVPVAYRPDDIIVLRRNPYYWKVDEAGNQLPYLNELH 327
            TT+    N  P       V+  + P  Y      +  RNP YW  D A  ++  L    
Sbjct: 179 -TTFT---NENPVGTGPFTVIDTFTPQLY------IQCRNPNYW--DAANLEVDCL---- 222

Query: 328 YKLSTWADRDVQAIAGSGDISNLEQPENFVESLKRAANESAPARLAFGPRVIGYNMHMNF 387
            ++   A+ D   + G    S L+   +FV  + R    + P    + P        +NF
Sbjct: 223 -RVPQIANND--QLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNF 279

Query: 388 SGNGWGDPDERAKAVRELNRNLDFRKAVTMAVDRKKLGEALVKGPFTAI-YPGGLSSGTS 446
                 +PD    A +E   N+DFR+A +MA+DR+ + +    G  T   +  GL     
Sbjct: 280 K-----NPDP---AKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFE 331

Query: 447 FYDRNSTI-----YYPHDLEGAKVLLEKVGLKDTDGNGFVNFPAGKLGGRDVEIVLLVNS 501
            +   +T      +  +D+EG+K LL K G KD +G+GFV  P+GK      E+++   +
Sbjct: 332 AWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGK----SFELLIQSPN 387

Query: 502 DYSTDRNLAEGMVGQMEKLGLRVVLNALDGKQRDAANYAGRFDWMIHRNTAEFASVVQNT 561
            ++   N  +  V Q++++G++      +    + A   G +D             V  T
Sbjct: 388 GWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYD-------------VAYT 434

Query: 562 PQLAPTGPRTSW---HHRAPEGGEVDVMPH-------EQELVDIVNKFIASNDNDERTEL 611
                  P T W   ++ A + G  D MP        +++L  +++ F  + D +E+  +
Sbjct: 435 NYFHGADPFTYWNSGYNSALQSG--DGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAI 492

Query: 612 MKQYQKVATTNVDTV 626
               QK+   N  T+
Sbjct: 493 AHGIQKIIAENQVTI 507