Pairwise Alignments

Query, 359 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 361 a.a., permease PerM, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.0 bits (206), Expect = 6e-21
 Identities = 87/350 (24%), Positives = 152/350 (43%), Gaps = 34/350 (9%)

Query: 29  LVALVVGLVVCYFLAVPFLPALTWALVLTVMFR-PLHRRIEKRLRYPEAAAAATVAIAAF 87
           L+A++VGL +  + A   L  L  ALVL  +   P+ + +  +L      AA+ V I   
Sbjct: 21  LLAILVGLALVLYFAGGLLAPLLVALVLAFLLEWPVAQML--KLGINRTTAASLVLIIFL 78

Query: 88  VVAVPLTF------------MAERLVNEAAKGAQIVEEAVRSGTWRDALANYPRLAPVVV 135
            + V LTF            +   L +   KG Q V+      T      +  +L  +V 
Sbjct: 79  GIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGLQTVQGLA---TQYPQFISVEQLNLMVA 135

Query: 136 WIETQLDLAGIAGSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDGQQALGALKE 195
            ++  LD   +   A   L  +SAS +      +V AIL    +F+FL+D  Q +   K 
Sbjct: 136 ELKKLLDTQHVLDIAKQ-LIGYSASLL----VLMVYAILVPLLVFFFLKDKDQLISGSKR 190

Query: 196 YSPLSSQEMNRLFTRVNETVQAVVFGTVAVAAVQGAMGGLMFWLLGLPAPMVWGLAMGLL 255
           + P + Q   +++  +++ +   + G V    + G    ++F  +GL    + G+  GL 
Sbjct: 191 FFPTNRQLARKVWFEMHQQIFNYIRGKVIEIVIVGVASYILFAFMGLSYSALLGVLTGLS 250

Query: 256 AVVPVLGAFIVWLPAALSLALGGEWGKALILVAWGAGVVATID-NLLYPIFVGDRLKLHT 314
            ++P +GA +V LP  L       +      +  G G++  +D N+L PI   D + LH 
Sbjct: 251 VLIPYVGATLVTLPIMLVAFFQWGFSSEFGYLMLGYGIIQALDGNVLVPILFSDAVDLHP 310

Query: 315 LTAFMSMIGGIIVFGSAGLVIGPVAFTVTL-----LLLDIWRRHNSNPEA 359
           +     +I  ++VFG    V+G V F + L      +++ W +    P A
Sbjct: 311 VI----IIAAVLVFGGLWGVLG-VFFAIPLASLVKAVINAWPKTEIEPSA 355