Pairwise Alignments

Query, 416 a.a., OMA family outer membrane protein from Sinorhizobium meliloti 1021

Subject, 921 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 52.8 bits (125), Expect = 4e-11
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 30  FPMITSMPAQAGDYRLNSGDVLTFDFLDDAELPVTATVSGAGVAQFPLIGGVEVIGLTVP 89
           F  ++ +P   G+Y +  GD +               ++  GV QFP +G + V GLT  
Sbjct: 129 FAPVSDVPVP-GEYLVGPGDNIKIQLYGKENKEYDLVINREGVIQFPELGPIPVNGLTFS 187

Query: 90  EALAKLRSEYRRRDVLVDPKISLDISTFRPIFVLGEVKTPGSFPFYSGLTVEQAIGLAGG 149
           E    L    +++ + ++  I++       IFV G+   PGS+   S  T+ QA+ +AGG
Sbjct: 188 ELRETLAQRIQQQMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQALFVAGG 247

Query: 150 M 150
           +
Sbjct: 248 V 248



 Score = 42.7 bits (99), Expect = 5e-08
 Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 42/348 (12%)

Query: 92  LAKLRSEYRRRDVLVDPKISLDI-----STFRPIFVLGEVKTPGSFPFYSGLTVEQAIGL 146
           L KL ++  R+++L    + L+      +  + + V G+V+ PG +P  SG  V   I  
Sbjct: 559 LLKLSNQMARQELLYPVMVKLNNQGRAGAGIQVVGVDGQVRLPGLYPLTSGAKVNDLIVA 618

Query: 147 AGGMQVAAASASDRIVARARLRAEAEAANAEIVHEAIYAARLVAQLKSSDKIDLADVPEV 206
           AGG++  A +    + +        + + ++  H+ I  A L  Q  SS  + L+     
Sbjct: 619 AGGLKEGAYTTRAELTSTV-----VDNSGSKTEHKNIDLA-LALQNNSSANLMLS----- 667

Query: 207 ARDYVTGVPLDG-----VIELEEKILKADLAANKSQAQILSEGITQSEGGID--ILNQLI 259
            RD +T +         V+E+  ++ K     N  + + LS+ IT+  G  D   L   +
Sbjct: 668 GRDILTVMTTPDWQETKVVEVRGEV-KFPGRYNIRRGETLSDLITRVGGFTDYAALPSAV 726

Query: 260 LQQKDVVQNSKEDVERIATLRKRGLNTESDLSRAENSASAEQAQL----LETFATLARSR 315
             ++ V Q  + +++++A   +R + T   +S+     +   AQL    LE    + R  
Sbjct: 727 FVRESVRQQEQIEIKKLADQLRRDIATRG-ISKDGTVVNYADAQLMLADLENIKAVGRLV 785

Query: 316 QELSGLKLQLAKLAADREKDILTQLQAREIAIQKLISGKHSAE---------EQILLMAA 366
            +L  + L + +     E   +  + + +  I  +   +H A          +Q L M+ 
Sbjct: 786 VDLPAISLGITQADLQLEDADILYVPSTKQTIAVMGEVQHPATHRFKDGLTIDQYLAMSG 845

Query: 367 VAEDETKKNQISYTYEIRRNPMGGTPT-SIKASTLTELVPGDVLMVSI 413
            A +     +   TY I+ N     P+ S   S+  +L PGD ++V +
Sbjct: 846 GARERADAGR---TYVIQANGSVLMPSRSSWFSSGEQLQPGDTVIVPL 890